Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00081 ATGAAGATCGAAAAACTAGTTATTCCTGCAATTGCTGAACTAACACATGCATGGACAACAGTTTTTGGCTTCACACATCTGGACGAATCACTCAGGCAAGAACTGAGGTCACTGAATATGGTGGTCTTCCCTGCGAGTTACTTTTGCTGGTGCATACGTTTTACTGACTTTTTCCTAACAGGTTCTGAGAAAATTGGACATGAAGATGACGATTTTATCCATACCAAAATGGGAAATAGGTCAGATATGGTTTTGGTCGATGGGATTCTCTGTTCGAAATCTCATTCTGAGGAAATGGAAACTGCTTGTTCTGATCCATGTTCAGCAGAAAATCTTGAGAACAAATGTCACTCGTTCACTGCTATGAATTGGATTTTATCAGAAGAGAATATTATTCTAAAGCGAACAAGAAACTGTATTGAGCTTAAGTTAGTTAGGTATAGTCCAAAAAGTCAAGTCAATAATATTTCAAAGCGAATAGTGTCTCTGAAGAAATCTTCCAAGAAAAAAGAGGAGGTGAAGAAAGCTACAACAACTCCAAATTTGGGTTCCAAAGATCACAAGGTTCCCAGAGTCGATGAATTGGCAAGAAGAAAAAGTGCCGTGCCCCGTGTGGACGAGATCAATGATGGGCTTAGTGTGAACAAGAGGCAGAGGACTCCCACGTTTAACCAGCTTACGGGTCCTTACCACGAACCATTTTGCCTGGACATTTTCATATCAAAAGCCTCTGTTCGTGCTTGCGTTGTTCACAGGGTAACGAGCAAGGTTGTTTCTGTGGCACATTCCATTTCCAAGGACATCAAGTTTGACCTGGCTTCTACCAAGAACAAAACCACTTGTGCGGCAGTGGGGGCAATTCTCGCTCAAAGAGCTTTGGGTGATGATATTCATGACGTGATTTACACTCCAAGGAAAGGAGAAAGGGTGGAGGGAAAGCTTCAGATTGTTCTGCAGTCCATTATTGACAATGGCATCAACGTTAAGGTAAAGATTAAGCAGAGACCCAAGAAACCATTCAACCGCATCACCTGA 1035 0.4193 MKIEKLVIPAIAELTHAWTTVFGFTHLDESLRQELRSLNMVVFPASYFCWCIRFTDFFLTGSEKIGHEDDDFIHTKMGNRSDMVLVDGILCSKSHSEEMETACSDPCSAENLENKCHSFTAMNWILSEENIILKRTRNCIELKLVRYSPKSQVNNISKRIVSLKKSSKKKEEVKKATTTPNLGSKDHKVPRVDELARRKSAVPRVDEINDGLSVNKRQRTPTFNQLTGPYHEPFCLDIFISKASVRACVVHRVTSKVVSVAHSISKDIKFDLASTKNKTTCAAVGAILAQRALGDDIHDVIYTPRKGERVEGKLQIVLQSIIDNGINVKVKIKQRPKKPFNRIT 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00081 344 SUPERFAMILY Translational machinery components 218 326 - -
Vian10g00081 344 FunFam uncharacterized protein LOC106777373 isoform X2 216 327 - -
Vian10g00081 344 MobiDBLite consensus disorder prediction 167 187 - -
Vian10g00081 344 CDD Ribosomal_L18_L5e 230 326 - -
Vian10g00081 344 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 185 328 IPR005484 GO:0003735|GO:0005840|GO:0006412
Vian10g00081 344 Gene3D - 214 327 - -
Vian10g00081 344 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 235 327 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00081 Vian-Chr10 746097 750330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00081 1 45 PHD Transcription Factor Family AT1G05380 64.444 1.04e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00081 K02881 - gmx:100802391 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00081 10 746097 750330 Vian10g00081 10 746097 750330 ECH