Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00080 ATGGAACCAGGCGTGAGATCGAGTGGTTCTGGGGTTGTGGTGAAGAGCAGAAACTCCTCGGGTTGTTTAATTGTGCGAAAGAAAGGGGATGGATTGGGTGCTACTGCTTCCACTTCTCGGAAGCTCTATGAATCCAAGAAAAGGGCCAATATCAGCGTTTCCCTGAGTGATTCTGGATCAAGCGACGAGCTGCTGATTCCTCCTGGTAGAAGGCTCGGTCCTGAGACTATTCGAGTTTGCAATGGTTTGGCTGCATCTGAGCGGGGTGGGAATGAAGTTAGTCGGAAAAGGGACAGAGTGGAACGAATTAGGGTAACTGGGGAAGGTATTGCGGCGGAGAAAGGTTTGGACCCGAGGGACAGGAAGCGTAGTAAGTTGGATGTATATGATTTTGATGAATATGATGGAATGGGTGTGGAAAACACAAGGAGGAGGCATTTAGATGATAATGGAGTTGGTCACGGAGGAGGAAGGTTTATGGGACCAGTGCACGCTGCTAGAAATGGCGTTGATAGGGAATTCAAAGCAGGTTCAAGTGGACGAGTTCTCGATAAGAGAAAGGACTCCTATGGTGACAGGCCTAGTGGCTTGTTTCCGGTGGATGATGTTGAGCACAGTAGGTTCAAGATGAACAGGGATGGTACTCGGGCACCTGTATCCCCGCAGAAGGAGAAGTTTAATTCAGATGAGTCCATTAGGGTTCAGGGGAAGAATGGTGTTTTGAAGGTAATGGTTAATAAGAAGAAGGTGCGTGGGCCATCAGAACAGTATTATGATCATCGCAAGCCTGTAGAAAGCAGGCAAAGGTTAAGAACCGAAGAGCCTACCAAGAGGATAAAGGCTGAAGAGACTAAGAGGAATGTTCCAAGTCGTCCTTCATCATACATGGAAACAAAACCTGTTGAGAAACCAAGATTAGTCAAGAGGCCAGAAAAGAAACGGATAACGCCCAAAAAATCCTTGTCAAGCAAGGACAGTAAGGGTGATGAGGGGGATTCAGATAACAGTGACGCATCACTGAATCCGGGAATAAGAAATACTGAAACTCATAAGCCTGCAAAAAAAGTAATTTCGGAGGATGAGCAGACACCTGTGCACGAAAAACTCCCCACCACAGGAACAAAAGATGGGAAAATCAAGCGTGGCAGTGGTACAGAAAAGCAGAAACTGCGAGAGCGAATAAGGGAGATGCTGCTGACTTCAGGTTGGACTATAGACTATAGACCTCGAAGGAACAGAGACTACCTGGATGCAGTTTACATTAACCCAGCAGGTACAGCCTATTGGTCCATCATCAAGGCCTATGATGCGCTTCAAAAGCAATTGAATGATGATGCTAATGAGGTCAAGGCCAAAGGGGATAGTTCTTCTTTTTCTCCTATTGCAGATGAGGTGCTCAGTCAGCTAACAAGGAAAACTAGAAAGAAAATGGAGAAAGAAATGAAAAAGAAGAAGAAAAAATATGATAGTGAAAGTGGTAACGAAAAAGAGCCTCAAAGAAAGAGATCTGCCAGCAACAAGTGTGATATGAATAGCACGGACAGTGACAGCAACGAGGAGAAATTAAGCTCCTTTATAAAGCAGGGAAGTAAGTCAATGAAAAATAAAATGTCCGAAAATATCATTACCGGTGCTCGCACTAAAATCCAGAATGCTACCCATCACTCAAGTGATGGAATGGAAAAATCATCATTTGGAGGTGATCCTCATATACACGGACGGAAGAGTAAAAAACACGGAAGATGTACCTTGTTAGTTCGCAGTTCTAACAAAGGATCAAATTCGGAATCTGATGGCTTTGTCCCATATGTGGGGAAAAGGACAGTTCTTGCCTGGTTAATTGACTCTGGAACTGTAGAGCTAAGCCAAAAGGTTCAGTACCGCAGACGGAAAAAGGTCCTGCTGGAGGGGTGGATCACAAGAGATGGCATTCATTGTGGCTGCTGCAGTAAGATCCTTACTGTTTCAAAGTTTGAGCTTCATGCAGGAAGCAAATTGCCACAACCATATCAAAATATATATTTGGAATCCGGTGTTTCTCTTCTACAATGCCAAATAAATGCATGGAATAGACAAGAGCATTCTGAAAAAATTGGTTTCCATTCTGTGGATATTGATGGTAATGATCCAAATGATGATACATGCGGTATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATGGTTGTCCATCAACATTTCATCAGAGCTGCTTGGATATCCAAATGCTTCCTCCTGGTGAATGGCATTGTACAAATTGCACCTGTAAATTTTGTGGCATAGCCACTAGGACTTCTGAAAAAGATGATGCATTTGTGTATGTCCTACGGACATGCAACTTATGTGAGAAAAAATATCATGACTCTTGCTCTGAGGAGATGGATACCCATCCTAATAACTTGAATACTTCAAACCTTTCTTTCTGTGGGAAAGAGTGTAAAGAGCTTTCTGAACACTTGAAGAAATACCTTGGTACCAAGCATGAACTAGAAGGGGGGTTTTCATGGTCTCTCATTCATAGAACAGATGAAGACTCAGAGGCAGCTTTCAGGGGAATTACCCAGAGAGTAGAATGCAATTCAAAGTTGGCTATTGGACTGGCTGTCATGGATGAATGCTTTTTACCTGTTATTGATAGGAGAAGTGGGATCAATATAATCCGCAATGTTTTATATAATACTGGGTCAAACTTTAGTCGGTTGAGCTATGGTGGATTTTACGCTGCTATTTTGGAAAAAGGGGATGAAATAATTGCTGCGGCATCTATCAGGTTGCATGGAACTAAGATAGCAGAGATGCCATTCATTGGAACTCGCCATGTATATAGGCGCCAGGGGATGTGCCGCCGGCTCTTTTCTGCCATTGAATCGGCCCTTTGCACTCTGAAAGTTGAAAATCTAGTTATTCCTGCAATTGCTGAACTCACGCATACATGGACAACGGTTTTTGGCTTCACACGTCTAGACAATTCACTCAGGCAAGAAATGAAGTCACTTAATATGATGGTCTTCCCTGGTATAGATATGTTACAAAAGCGGTTGGTTGAACAAGAAAAACATGAAGGTTCTGAGAAAATGGGAAATGGAGGTAATGATTTTAACCATACCAAAATGGGAAATGGGTCAGATATAGGTTCTTTAACTCAACAAAATCCTCATGGAAGTGATGATGCTAGTTCAAATCCTGCTAATGAGACGAATGATGAATGCAGCGATGCTTCTCAAGAACTTAACAATCAAGTTATGGTTGATGGAACTCTCTGCTCCAAATCTGATTCCGAGGAAATGGTGTCTGATTCAGTTTCTGATAAATGTATTTCTCCTTCTAGGACTAGTCACAGTGCACTAGAAATGAAGAATAAAGTGGATGCTGCTCCTCCTGTTGATAAATTAAATCCTCCTTCAAAATGCGAATCCATTTCTCCTAATGACACATCTGTGAGTGACTCAGAAGATATTCCAAATGTTAAAGGTTTGGTTCAGGAAACTTCTTCGTCTGATCCATGTTCACAGGAAAACCTGGACAAGAAAGGTCACACATTCACTGCTATGAATTGTGACTCGTCAGAGCCTGCCATTAATCCAGTGGTGGGTTCTCCAAAGGCAGGCGATACTTCACCTACTAAAGAGGTTCGTATGGAGGACTCCCTTGAAGCTGTTTCTTCAAGGAGTTTATTGGAGGAGAATATTAGAAAGGGGAATGATCAGAATATAGATGTCTCCAGTTCTGCTCTCAAACTTGCCGATAAGAGTTTGTTGCAGGTAGGATCTGATTCCAAAAATGAAATTGGATGTGAAAATGAGAAGGATGTACGTGCTGTAAACGCTTCTGGCGATAATTCTGATACTGTTCTGTTCTAG 3861 0.4266 MEPGVRSSGSGVVVKSRNSSGCLIVRKKGDGLGATASTSRKLYESKKRANISVSLSDSGSSDELLIPPGRRLGPETIRVCNGLAASERGGNEVSRKRDRVERIRVTGEGIAAEKGLDPRDRKRSKLDVYDFDEYDGMGVENTRRRHLDDNGVGHGGGRFMGPVHAARNGVDREFKAGSSGRVLDKRKDSYGDRPSGLFPVDDVEHSRFKMNRDGTRAPVSPQKEKFNSDESIRVQGKNGVLKVMVNKKKVRGPSEQYYDHRKPVESRQRLRTEEPTKRIKAEETKRNVPSRPSSYMETKPVEKPRLVKRPEKKRITPKKSLSSKDSKGDEGDSDNSDASLNPGIRNTETHKPAKKVISEDEQTPVHEKLPTTGTKDGKIKRGSGTEKQKLRERIREMLLTSGWTIDYRPRRNRDYLDAVYINPAGTAYWSIIKAYDALQKQLNDDANEVKAKGDSSSFSPIADEVLSQLTRKTRKKMEKEMKKKKKKYDSESGNEKEPQRKRSASNKCDMNSTDSDSNEEKLSSFIKQGSKSMKNKMSENIITGARTKIQNATHHSSDGMEKSSFGGDPHIHGRKSKKHGRCTLLVRSSNKGSNSESDGFVPYVGKRTVLAWLIDSGTVELSQKVQYRRRKKVLLEGWITRDGIHCGCCSKILTVSKFELHAGSKLPQPYQNIYLESGVSLLQCQINAWNRQEHSEKIGFHSVDIDGNDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQMLPPGEWHCTNCTCKFCGIATRTSEKDDAFVYVLRTCNLCEKKYHDSCSEEMDTHPNNLNTSNLSFCGKECKELSEHLKKYLGTKHELEGGFSWSLIHRTDEDSEAAFRGITQRVECNSKLAIGLAVMDECFLPVIDRRSGINIIRNVLYNTGSNFSRLSYGGFYAAILEKGDEIIAAASIRLHGTKIAEMPFIGTRHVYRRQGMCRRLFSAIESALCTLKVENLVIPAIAELTHTWTTVFGFTRLDNSLRQEMKSLNMMVFPGIDMLQKRLVEQEKHEGSEKMGNGGNDFNHTKMGNGSDIGSLTQQNPHGSDDASSNPANETNDECSDASQELNNQVMVDGTLCSKSDSEEMVSDSVSDKCISPSRTSHSALEMKNKVDAAPPVDKLNPPSKCESISPNDTSVSDSEDIPNVKGLVQETSSSDPCSQENLDKKGHTFTAMNCDSSEPAINPVVGSPKAGDTSPTKEVRMEDSLEAVSSRSLLEENIRKGNDQNIDVSSSALKLADKSLLQVGSDSKNEIGCENEKDVRAVNASGDNSDTVLF 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00080 1286 MobiDBLite consensus disorder prediction 171 387 - -
Vian10g00080 1286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 704 810 IPR013083 -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1136 1153 - -
Vian10g00080 1286 SUPERFAMILY FYVE/PHD zinc finger 699 756 IPR011011 -
Vian10g00080 1286 Pfam Tify domain binding domain 637 687 IPR032308 -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 316 334 - -
Vian10g00080 1286 Coils Coil 432 452 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 248 287 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1094 1115 - -
Vian10g00080 1286 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 901 969 IPR016181 -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 469 534 - -
Vian10g00080 1286 Pfam PHD-finger 715 757 IPR019787 -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 348 387 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 552 578 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1181 1216 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 505 534 - -
Vian10g00080 1286 PANTHER PHD FINGER PROTEIN 12 361 1172 IPR042163 GO:0003714|GO:0045892
Vian10g00080 1286 MobiDBLite consensus disorder prediction 483 504 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1017 1073 - -
Vian10g00080 1286 ProSiteProfiles Zinc finger PHD-type profile. 712 757 IPR019787 -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1094 1153 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 1029 1073 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 177 212 - -
Vian10g00080 1286 SMART PHD_3 714 755 IPR001965 -
Vian10g00080 1286 Coils Coil 467 494 - -
Vian10g00080 1286 CDD PHD4_NSD 715 754 - -
Vian10g00080 1286 MobiDBLite consensus disorder prediction 52 71 - -
Vian10g00080 1286 ProSitePatterns Zinc finger PHD-type signature. 715 754 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00080 Vian-Chr10 732812 739756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00080 1 1015 PHD Transcription Factor Family AT4G14920 49.468 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vian10g00080 TDBD 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00080 - - gmx:102666194 1991.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00080 10 732812 739756 Vian10g00080 10 732812 739756 ECH