Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00077 ATGGCTATCCAATTTCTTCTCTTTATTGCCTTCCTTCTATGTTCCTTTGCTTCTGGGATTGATGCTAACTCAATCCAACTGGGCTCCACCATCGTGGCTGGCACCAATTCATCTTGGCGGTCATCCTCTGGGGATTATGCCTTTGGATTCTACAACCTTGTTGGTGGCCGCTATCTTGTTGGAATCTGGTTTGACAAAATTCCAAATAAAACATTGGTTTGGTCTGCAAACCGTGACAACCCAGTAGAAATTGGATCATACATCAATCTCACACGAAGTGGCCAATTTGTGCTCCAACCTCTCAACGGGACTTCATTTCCCATCTACGAAGGAACAAACACAGCATCAGCAGTTATGCAGAATGACGGGAATTTCGTCTTGAAGAATGCACTTTCCAACGTTATATGGCAGAGCTTTGATTCACCCACGGACACTCTTCTACTAGGCCAAACTTTGAATTCCAGTCGGAATCTCTATTCCAATGCCAATGGATCAGTTGACTACTCAACTGGACAATACAGTTTGGAGATTCAGCAATCTGATGGCAACATTCTTCTTAAAGCTTACCGGTTCACGGATTCTGCCTACTGGTGGAGTGGCACTGCCCAAAACACAGGTGTGAGAATTATTTTCGACAACACAACAGCTTTTCTTTACGCGGTCAATGCCACCCACCAAATTATATTTAACATGACCACGAATGTTGAGGGTGCTATCGAAGATTACTATCACCGTGTGTTGGTGGATGACAAGGGAAACTTTCAGAAGTTGATTTACCACAAAGAAAATGGAGGTGAGTGGAGATCTGTGTGGCAGGCAGTAAAAGAGCCTTGCACTGTGACTGCTCTTTGTGGGGTGTATGGCTTCTGCAATACAACTGATTCCGAAACCCATACATACACTTGTGGATGCTTACCTGGCTATACCCCTTTAGATCCAACAGCACCCTCCAAGGGGTGCTATCTCAGTGAGGTCAAGGACTTGTGTCCTGCAAATTCTTCTGGCTCAAACTTTATGGTGGAAGTGAAAGAGATCCAAGATGCTGATATACCAAACGAGGGCTACTTTTATTTTGATCTAGTAGTCTTGAATAACATGGATCTGGATGGATGCAAGAAAGAATTGTTGGATGATTGTCTCTGCATGGTTGCAGTTTCAAAGGGCAGTGATTGCTATAAGAAAAAATGGCCAATTATAAATGCCGTAAGAACCATCCCTAAAACTAATGATTTTGTGATGCTGGTTAAAGTTCCTCTGGTTGCCAATGATAAGGAATCATCGTCTTTGGTTATTTTGATAGTGGCTCTCATCTCTTGTTCACTACTTGCTGCATTGTTTTTAGCTACTACCATATATCATCACCCCGTTTGTCTGTATATCCTATATAAACAGGCACCACCAAAGCCCAAGCCAAAGCCGATGGATATCAATCTGAAGGCATTTTCATTCCAACAGCTGAGAGAAGCAACAAACGGATTCAAAGACAAACTTGGTCGAGGAGCCTATGGTACAGTGTATGGTGGGGTTTTAAACTTGGAGGATCAACAGGTTGATGTTGCTGTCAAACAACTTGAACAAGTAGACGACCAAGGTGATAAAGAATTTGTGACAGAAGTTCAAGTTATTGCTCTCACTCATCACAGAAATCTTGTTGGTTTACTGGGCTTTTGCAATGAACAGAGTCATAGGCTTTTGGTTTATGAGAAAATGGAAAACGGAACACTATCCAACTTCCTTTTCGGAGAAGGGGATAAACCCAGCTGGGAGAATTGGGTTATGTATCTGGCAAAAGAAAACAACTTAAGAGCACCAGTGATTCATCATCTTGAAGTTGAAAGTGATATCAAGAGGTTTGAAAGAATGGCAATGGTTGGATTATGTGGTCTCTTTCTTGTGGGAATATGGTTTGGGAGAATCTCAGATATAACACTCGCATGGTACCTCTCTCCCCCTGTGGAAACAAATTCTCAAATCCAATTCACTTCTGCAGGAAACCTTGTGGTAGCCTACCAAAACGGAACTACTGCTATGACCATATACAATTCTGCACAAGGCGATGCTGCAACTTCTGCCTACATGCAAGATGATGGCAATTTTGTGATCAAGGACTCCAACTTAGTATATGTGTGGCAGAGTTTCAACTCTCCAACCAACACCATCTTACCGGGCCAAACCTTGCTGAGTACTAAAACCCTCTTTTCCAAAGGGAAAGGACCTTCAAATTACTCGTTGGGAAGTTTCATGTTACAAATGCAAGAAGATGGCAACTTGGTGCTCAAAGCGTACCGGTGGGCAGACCCTGCATACTGGTTCACTTCACCCATAACCGCCAATATGACATTGGTGTTTAATGCTACCACTGCTCTCATGTACCGTGTCAACGATGCTGGGAACATCTTCACCCTAACCGAAATCACTCCAACCCCGGTGGAGGATTACTATCACCGTGCTACAATAGATGAGAATGGGAATTTCCAACAATATGCTTATCACAAGAGGAATGGGACCGGTTGGAGGAGGGTTTGGAGAGCCGTGGAGGATCCCTGCAGAGTGAATGCTATCTGTGGTGTGTATGGCTTGTGCAGTTCTCCTGACAATGAATCAATCAAGTGTGATTGTATTCCAGGTTATATCCCTTTGGATGATCAAGATGTTTCCAAAGGGTGTCACCCACAAGCTGTCATCAATTATTGTGCAGAGAACAACTTCAAGCTCCAGGTCTTTGACGACACTGATTTCCATTTTGATACTCATCTTGTTAGCTTAGCTGGCGTTGACTTCGAAAGTTGTAAGAAGGATGTAATAGATGATTGTAACATTGTTGCTGCAACTTATAACCATTCCACCTCCACATGTGCTAAGAAGAGACTGCCCTTGCTGAATGCTAGAAATAGCTCTTCTTCAAAGGGATTGAAAGCACTGCTTAAAGTTGCTAACAGGATTGAGTCTGGGACATCTGAACTTCCAAAGAAGAAAAGTTTTAATGTAAGAGTCTTTTTGAAGGTTCTTGTTGCAGTTACTGCAACTCTTGCCTGTTTCTTTGGTGCCCTTGCTGTCTACTATCATCCTTTCACTCGGAGACTTACAAGGAAAAAGAAGCATCTGAATGCAACAGCTATTGGAATCAACTTCAGAGAATTTACTTTTCAGGAGCTGCATGAAGCAACAGACGGATTTACTAAGATTCTTGGAAAGGGAGCTTCTGGCAAAGTCTATCGTGGTGCTTTAGTAATAGGTGATGCAAAGATTGATGTTGCAGTAAAGAAACTGGAAAAGAAAATAGAAAAAAGTGATAGTGAATTCACGACTGAGCTCAAAATTATTGGTCGTACTCATCACAGAAATTTGGAACTAGAGTTAGTAGTGGGACATGACTCGGAAGTGTTGAATGATTTCAAGAGGTTTGAGGAAATGGCCTTGGTTGGACTATGGTGTGTTCATCCAAATCCTGCTTTGAGACCTTTGATGAAGCAAGTGATGCAAATGCTAGATGGAACACTAGAAGTTGGTGTTCCTCCTTTGGTTTATGAGCAGATGATGGTAGATTAA 3549 0.4243 MAIQFLLFIAFLLCSFASGIDANSIQLGSTIVAGTNSSWRSSSGDYAFGFYNLVGGRYLVGIWFDKIPNKTLVWSANRDNPVEIGSYINLTRSGQFVLQPLNGTSFPIYEGTNTASAVMQNDGNFVLKNALSNVIWQSFDSPTDTLLLGQTLNSSRNLYSNANGSVDYSTGQYSLEIQQSDGNILLKAYRFTDSAYWWSGTAQNTGVRIIFDNTTAFLYAVNATHQIIFNMTTNVEGAIEDYYHRVLVDDKGNFQKLIYHKENGGEWRSVWQAVKEPCTVTALCGVYGFCNTTDSETHTYTCGCLPGYTPLDPTAPSKGCYLSEVKDLCPANSSGSNFMVEVKEIQDADIPNEGYFYFDLVVLNNMDLDGCKKELLDDCLCMVAVSKGSDCYKKKWPIINAVRTIPKTNDFVMLVKVPLVANDKESSSLVILIVALISCSLLAALFLATTIYHHPVCLYILYKQAPPKPKPKPMDINLKAFSFQQLREATNGFKDKLGRGAYGTVYGGVLNLEDQQVDVAVKQLEQVDDQGDKEFVTEVQVIALTHHRNLVGLLGFCNEQSHRLLVYEKMENGTLSNFLFGEGDKPSWENWVMYLAKENNLRAPVIHHLEVESDIKRFERMAMVGLCGLFLVGIWFGRISDITLAWYLSPPVETNSQIQFTSAGNLVVAYQNGTTAMTIYNSAQGDAATSAYMQDDGNFVIKDSNLVYVWQSFNSPTNTILPGQTLLSTKTLFSKGKGPSNYSLGSFMLQMQEDGNLVLKAYRWADPAYWFTSPITANMTLVFNATTALMYRVNDAGNIFTLTEITPTPVEDYYHRATIDENGNFQQYAYHKRNGTGWRRVWRAVEDPCRVNAICGVYGLCSSPDNESIKCDCIPGYIPLDDQDVSKGCHPQAVINYCAENNFKLQVFDDTDFHFDTHLVSLAGVDFESCKKDVIDDCNIVAATYNHSTSTCAKKRLPLLNARNSSSSKGLKALLKVANRIESGTSELPKKKSFNVRVFLKVLVAVTATLACFFGALAVYYHPFTRRLTRKKKHLNATAIGINFREFTFQELHEATDGFTKILGKGASGKVYRGALVIGDAKIDVAVKKLEKKIEKSDSEFTTELKIIGRTHHRNLELELVVGHDSEVLNDFKRFEEMALVGLWCVHPNPALRPLMKQVMQMLDGTLEVGVPPLVYEQMMVD 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00077 1182 SMART egf_5 277 321 IPR000742 -
Vian10g00077 1182 SMART egf_5 848 890 IPR000742 -
Vian10g00077 1182 SUPERFAMILY Protein kinase-like (PK-like) 472 595 IPR011009 -
Vian10g00077 1182 Pfam Protein tyrosine and serine/threonine kinase 1060 1116 IPR001245 GO:0004672|GO:0006468
Vian10g00077 1182 Pfam Protein tyrosine and serine/threonine kinase 493 583 IPR001245 GO:0004672|GO:0006468
Vian10g00077 1182 SUPERFAMILY alpha-D-mannose-specific plant lectins 643 774 IPR036426 -
Vian10g00077 1182 Gene3D - 716 854 - -
Vian10g00077 1182 Gene3D - 142 282 - -
Vian10g00077 1182 SMART blect_4 600 716 IPR001480 -
Vian10g00077 1182 SMART blect_4 30 142 IPR001480 -
Vian10g00077 1182 Gene3D - 646 713 IPR036426 -
Vian10g00077 1182 Gene3D Phosphorylase Kinase; domain 1 1039 1126 - -
Vian10g00077 1182 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 20 140 - -
Vian10g00077 1182 Gene3D - 20 141 IPR036426 -
Vian10g00077 1182 FunFam S-receptor-like serine/threonine-protein kinase 463 569 - -
Vian10g00077 1182 Pfam S-locus glycoprotein domain 811 879 IPR000858 GO:0048544
Vian10g00077 1182 Pfam S-locus glycoprotein domain 239 310 IPR000858 GO:0048544
Vian10g00077 1182 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 201 IPR036426 -
Vian10g00077 1182 ProSiteProfiles Bulb-type lectin domain profile. 22 140 IPR001480 -
Vian10g00077 1182 ProSitePatterns Protein kinases ATP-binding region signature. 497 522 IPR017441 GO:0005524
Vian10g00077 1182 Gene3D Phosphorylase Kinase; domain 1 466 568 - -
Vian10g00077 1182 ProSiteProfiles Protein kinase domain profile. 491 829 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00077 1182 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 34 590 - -
Vian10g00077 1182 ProSitePatterns Protein kinases ATP-binding region signature. 1063 1089 IPR017441 GO:0005524
Vian10g00077 1182 SMART tyrkin_6 493 646 IPR020635 GO:0004713|GO:0006468
Vian10g00077 1182 Pfam D-mannose binding lectin 652 730 IPR001480 -
Vian10g00077 1182 Pfam D-mannose binding lectin 71 156 IPR001480 -
Vian10g00077 1182 SUPERFAMILY Protein kinase-like (PK-like) 1044 1116 IPR011009 -
Vian10g00077 1182 CDD B_lectin 41 142 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00077 Vian-Chr10 709403 715254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00077 464 592 Receptor kinase-like Gene Family AT3G19300 37.037 2.15e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian10g00077 PK_Tyr_Ser-Thr 1.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00077 - - pvu:PHAVU_002G046100g 999.193