Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00076 ATGGCGGAACCTGCATATATTGTGACGTCTGACAGTGAAACCACCGGAGAAGAAAAGTCATCTGCTTTTTCTGAAATAGCAATTGGAATTGATATTGGCACATCACAATGTAGTGTTGCTATGTGGAGTGGTTCCGGAGTGGAGCTCTTGAAGAACACAGGGAATCAAAAGACTATGAAATCGTTTGTAACTTTCAAAGGTAACACCCCTTCTGGTGGAGTCAGCAGTCAACTCTCCTACGAGGATGAGATGTTGTCTGGAGCCACGATTTTTAACATGAAACGCCTGATAGGCAGAGTTGATACCGACCCAGTTGTCCAGGCGTGTAAGAATCTCCCATTTCTAGTGCAGACCTTGGACATCGGTGTTCGTCCATTTATTGCCGCATTAGGGAACAATGTGTGGAGATCCACCACTCCAGAAGAAGTCCTGGCGATATTTCTGGTGGAATTAAGAGCAATGATTGAAGCTCAGCTGAAACGACGAATAAGAAACGTGGTTTTAACAGTTCCAGTTTCGTTCAGTCGATTTCAGCTAACCCGGATAGAGCGCGCCTGTGCCATGGCTGGTCTTCATGTTCTGAGGTTGATGCCTGAACCAACAGCTGTGGCTTTGTTGTATGCTCAACAACAACAGCAAAGTTCTCATGATAGTATGGGCAGTGGAATGGAGAAAATTGCTCTAATTTTCAATATGGGTGCTGGTTATTGTGATGTTGCTGTCACTGCTACAGCTGGAGGAGTTTCACAGATTAAAGCCTTGGCAGGAAGTACCATTGGTGGTGAAGACTTGCTTCAGAATATGATGCGTCATCTGTTGCCAGAATCTGAAAATCTATTTCGAAATCATGGAGTCAGCGAAATTAAGCGGATGGGCCTGCTACGAGTTGCAACCCAGGATGCAATTCACCAACTTTCCTCTCAGAACAGCGTTCGGGTTGATGTAGATTTGGGAGATGATGTGAAGATATGCAAAGCTGTTCACCGAGAGGAGTTTGAGGAGGTTAACAGAAAGGTGTTTGAGAAATGTGAAAGCCTTATCATTCAGTGTTTGAAAGATGCCAAGGTAGAAGTTGAAGATTTAAATGACGTGATAATTGTAGGTGGATGCTCTTATATCCCCAGGGTGAAGAGTCTTGTTGCTAACGTTTGTAGAAGGAAGGAACTTTATAAAGGCATGCATCCTTTGGAAGCTGCTGTTTGCGGTGCAGCAGTGGAAGGAGCAGTCGCTTCAGGCATCAATGATCCCTTGGGGAACTTGGACTTGTTAACTATCCAAGCTACACCTCTTGCCATTGGGATTCGTGCTGATGGAAACAAATTTGTACCCGTAATTCCGAAAGATACTGCTATGCCAGCGCGAAAGGAGCTAGTTTTCACAACAGTTCATGATAATCAAGCGGAGGCATTGATTATTGTCTATGAAGGTGAGGGGGAAAAGGCCGAAGAAAACCACCTGTTGGGATATTTCAAGATAATGGGAATACCTGCGGCGCCTAAAGGTATCCCAGAAATCAATGTGTGCATGGACATAAACGCTTCAAACGTGCTAAGAGTTTTAGCTGGTGTTGTGATGCCGGGTTCTCGCAAACCTGCTGTTCCTGTTATGGAAGTAAGGATGCCATCGGTGGATGACGGCCATGGTTGGTGCGCTGAGGCACTAAATAGAAGCTATGGTGCCACACTTGATTTGGTTACTCTCCGGAAAATCGCATTATAA 1719 0.4497 MAEPAYIVTSDSETTGEEKSSAFSEIAIGIDIGTSQCSVAMWSGSGVELLKNTGNQKTMKSFVTFKGNTPSGGVSSQLSYEDEMLSGATIFNMKRLIGRVDTDPVVQACKNLPFLVQTLDIGVRPFIAALGNNVWRSTTPEEVLAIFLVELRAMIEAQLKRRIRNVVLTVPVSFSRFQLTRIERACAMAGLHVLRLMPEPTAVALLYAQQQQQSSHDSMGSGMEKIALIFNMGAGYCDVAVTATAGGVSQIKALAGSTIGGEDLLQNMMRHLLPESENLFRNHGVSEIKRMGLLRVATQDAIHQLSSQNSVRVDVDLGDDVKICKAVHREEFEEVNRKVFEKCESLIIQCLKDAKVEVEDLNDVIIVGGCSYIPRVKSLVANVCRRKELYKGMHPLEAAVCGAAVEGAVASGINDPLGNLDLLTIQATPLAIGIRADGNKFVPVIPKDTAMPARKELVFTTVHDNQAEALIIVYEGEGEKAEENHLLGYFKIMGIPAAPKGIPEINVCMDINASNVLRVLAGVVMPGSRKPAVPVMEVRMPSVDDGHGWCAEALNRSYGATLDLVTLRKIAL 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00076 572 ProSitePatterns Heat shock hsp70 proteins family signature 3. 364 378 IPR018181 -
Vian10g00076 572 MobiDBLite consensus disorder prediction 1 20 - -
Vian10g00076 572 Gene3D - 91 146 - -
Vian10g00076 572 FunFam Heat shock 70 kDa protein 8 261 342 - -
Vian10g00076 572 Gene3D Actin; Chain A, domain 4 261 342 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 26 39 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 361 377 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 421 440 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 166 186 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 393 413 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 54 66 - -
Vian10g00076 572 PRINTS 70kDa heat shock protein signature 502 518 - -
Vian10g00076 572 Pfam Hsp70 protein 27 521 IPR013126 GO:0005524|GO:0140662
Vian10g00076 572 Gene3D - 28 408 - -
Vian10g00076 572 PANTHER HEAT SHOCK PROTEIN 70KDA 27 521 IPR013126 GO:0005524|GO:0140662
Vian10g00076 572 Gene3D - 212 390 - -
Vian10g00076 572 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 418 533 IPR029047 -
Vian10g00076 572 FunFam Heat shock 70 kDa protein 8 416 531 - -
Vian10g00076 572 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 423 528 IPR029047 -
Vian10g00076 572 SUPERFAMILY Actin-like ATPase domain 26 209 IPR043129 -
Vian10g00076 572 SUPERFAMILY Actin-like ATPase domain 225 409 IPR043129 -
Vian10g00076 572 CDD HSP70_NBD 28 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00076 Vian-Chr10 621818 623536 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00076 24 521 Calmodulin-binding Proteins AT1G16030 35.984 4.56e-96 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00076 K09489 - gmx:100809773 1004.2