Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00065 ATGGAATATCTCCGATCAAAAAGTGCAGGAAGTTGTCTCACTCTGGAGGTTATCAGTGGCCCTTCTCGAGGACTTCGTTGTTCTGTACAGTCGATCAATTCCTCTCGTCTACCGCTAACCATGGGAAGAGTCTCTCCGAGTGATTTGTTGATAAAAGATTCAGAAGTGTCAGGAAAGCACGCTATGATAAAATGGAATTTGGATAAAATGAAATGGGAGTTGGTGGACATGGGTAGTCTGAATGGAACACTATTGAACTCTAAGCCAATCAACCACCCAGACACTGAAAGTAGGAATTGGGGAAATCCAATGAGTCTTGCTAATGGAGATATCATAACACTTGGGACAACATCAAAAGTAATGGTCCATATTACATCCCAAACTCAGCATCACATTCCCTTTGGAGTTGGCATGGCATCAGATCCAATGGCTATGCGTAGAGGAGGAAAAAGGTTTCCCATGGAAGATGTTTGCTATTATCAATGGCCTCTACCTGGGCTGAATCAGTTTGGACTTTTTGGCGTTTGTGATGGTCATGGTGGAGATGGGGCTGCCAAATCTGCTAGCAAACTTTTTCCTGAGGTAATTGCTAGTATATTATCGGATTCATCAAGGAGGGAGAGAGTTTTGTCACTCGGTGATGCTTCAGATGTTCTTCGAGATGCATTTTCTCAAACGGAAGATCATATGAATCACCATTATGAGGGATGTACAGCAACAGTGCTTCTGGTGTGGACTGATGGTGAAGAAAATTTCTTTGCACAATGTGCTAATGTGGGGGACTCCACCTGTATTATGAGTTTGAATGGGAAGCAAATCAAGATGACAGAAGATCACAAGATAACGAATTATTCAGAAAGACTCAGAATCGAAGAGACAGGCGAACCCTTAAAAGAAGGGGAAACACGTCTATATGGTATAAATCTGGCAAGAATGCTTGGGGACAAATTCCTGAAACAGCAGGATACCCGGTTCAGTTCAGAACCTTACATAAGTGAAGTTGTGCACATTGATCAAGCAAGCAAAGCTTTTGCTATTCTAGCTAGTGATGGGCTGTGGGATGTCATCAGCGTGAAGAAGGCAATACAGCTTGTGTTGCAGATGAAGGAGAAATGTTATTCAGAGAGAGAGAATATAGCAGAAAAAGCTGCAAGCTTGTTGTTGAATGAGGCTAAAACGCTCAGAACAAAGGATAATACGTGTGTAATTTTCTTAGATTTTGATATCTTCAACAAATTCTCTTGTAAAGTTGAATCCTAG 1260 0.4167 MEYLRSKSAGSCLTLEVISGPSRGLRCSVQSINSSRLPLTMGRVSPSDLLIKDSEVSGKHAMIKWNLDKMKWELVDMGSLNGTLLNSKPINHPDTESRNWGNPMSLANGDIITLGTTSKVMVHITSQTQHHIPFGVGMASDPMAMRRGGKRFPMEDVCYYQWPLPGLNQFGLFGVCDGHGGDGAAKSASKLFPEVIASILSDSSRRERVLSLGDASDVLRDAFSQTEDHMNHHYEGCTATVLLVWTDGEENFFAQCANVGDSTCIMSLNGKQIKMTEDHKITNYSERLRIEETGEPLKEGETRLYGINLARMLGDKFLKQQDTRFSSEPYISEVVHIDQASKAFAILASDGLWDVISVKKAIQLVLQMKEKCYSERENIAEKAASLLLNEAKTLRTKDNTCVIFLDFDIFNKFSCKVES 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00065 419 ProSiteProfiles Forkhead-associated (FHA) domain profile. 39 90 IPR000253 GO:0005515
Vian10g00065 419 Pfam Protein phosphatase 2C 142 400 IPR001932 -
Vian10g00065 419 Pfam FHA domain 40 115 IPR000253 GO:0005515
Vian10g00065 419 FunFam Protein phosphatase 2C 70 143 414 - -
Vian10g00065 419 SUPERFAMILY PP2C-like 148 408 IPR036457 -
Vian10g00065 419 Gene3D - 7 142 - -
Vian10g00065 419 Gene3D - 143 414 IPR036457 -
Vian10g00065 419 ProSiteProfiles PPM-type phosphatase domain profile. 135 407 IPR001932 -
Vian10g00065 419 SMART FHA_2 38 90 IPR000253 GO:0005515
Vian10g00065 419 SUPERFAMILY SMAD/FHA domain 12 122 IPR008984 GO:0005515
Vian10g00065 419 PANTHER PROTEIN PHOSPHATASE 2C 126 403 IPR015655 GO:0004722|GO:0006470
Vian10g00065 419 SMART PP2C_4 129 405 IPR001932 -
Vian10g00065 419 CDD FHA_PP2C70-like 13 123 - -
Vian10g00065 419 ProSitePatterns PPM-type phosphatase domain signature. 172 180 IPR000222 GO:0043169
Vian10g00065 419 CDD PP2Cc 143 407 IPR001932 -
Vian10g00065 419 FunFam Protein phosphatase 2C 70 8 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00065 Vian-Chr10 518534 525760 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00065 11 408 PP2C-type Phosphatase Gene Family AT5G19280 66.341 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00065 K01090 - gmx:100170643 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00065 10 518534 525760 Vian10g00065 10 518534 525760 ECH