Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00059 ATGATGAAGAAAAAGTGCAGTTCAGGTCGGCAAAGGATTCCGATTGAGAAAATACCAAAAAAGAGTCACTTACAAGTAACATTTTCGAAGCGTCGTTCGGGACTCTTCAAAAAAGCGAGTGAGCTCTGCACACTCTGTGGAGTAGAAATCGCAATCATCGTTTTCTCTCCCGCGGACAAGGCCTTTTCGTTCGGCCACCCGCAAGTTGAATCCGTCGTTGATTCTTACGTAACTTCAAACTCATCACCAGAGTATAATCGCAGTGGTGGTGGTCACCAACTCGTTGAGGCTCATCGCAGTGCTAATATTCGTAATCTCAACGCGCAACTCACTCAGATTGTTAACGAGCTAGAGATGGAGAAAAGGCGAGGAGAAGAGCTAGATCGAGCGTGGAAAACGAGACAGAGCCAATTCTGGTGGGAGATCCCCGTTAACGAACTTGGATTGCAAGAGTTACAGCATCTGATGTTTTCGTTGGAGGAACTGAAAAACACTGTTGCAAAATATGCTACTCAAATAATGTCCATGGACCAAACTACTATTGGGCCAACAGTAACTGGACCCGGGCCCATTGGATTTACCCTTGGGCCTTACGATGCTTTCGACACCAAACATGCTGATATTTACGCTAATGCCCCCGGTCTGAGCTTTCCATATTAA 660 0.4591 MMKKKCSSGRQRIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPQVESVVDSYVTSNSSPEYNRSGGGHQLVEAHRSANIRNLNAQLTQIVNELEMEKRRGEELDRAWKTRQSQFWWEIPVNELGLQELQHLMFSLEELKNTVAKYATQIMSMDQTTIGPTVTGPGPIGFTLGPYDAFDTKHADIYANAPGLSFPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00059 219 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 SUPERFAMILY SRF-like 9 81 IPR036879 GO:0003677|GO:0046983
Vian10g00059 219 Gene3D - 90 181 - -
Vian10g00059 219 Coils Coil 100 127 - -
Vian10g00059 219 CDD MADS_MEF2_like 9 82 IPR033896 GO:0000977|GO:0045944
Vian10g00059 219 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Vian10g00059 219 PANTHER MADS BOX PROTEIN 10 167 - -
Vian10g00059 219 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Vian10g00059 219 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Vian10g00059 219 Coils Coil 159 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00059 Vian-Chr10 424907 425566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00059 7 214 Type I MADS-box Gene Family AT2G24840 45.794 5.55e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian10g00059 SRF-TF 2.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00059 - - lja:Lj0g3v0067779.1 243.432