Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00056 ATGGCTTCGCTCAAGCTTGTGCTGCTGTTGTTCATTCTCAGCTTCCTCAACTTGAACACTTGCAAAGCACAGAACCAACTGAGCGACGACCCTGTCTATCTGTACCATAACTGTTCAGGCGGCAACACCACCGCCAACAGTGCCTACCAACTAAACGTCGGCACCCTCTTCAGTTCCCTATCTTCAAAATCCATAGAATTCTCAAACGACACCGTCGGAACATCCTCCTCCGACAGGGTGTACGGACTGTTCATGTGCAGAGGAGACGTGCCCACGGCGCTGTGTCAACAGTGCGTGTTGAACGCAACGCGACGTCTCCGCTCAGAGTGCTCTCTGGCCAAACAGGCCGTGATATGGTACGACGAGTGCACTGTTCGCTACTCCAACCGCTCTTTCTTCTCCACGGTGGCCGTTCGGCCACGTGTCGGACTCCTCAACACTGCCAACATATCCAACCAAGAAGCCTTCATGAAACTGCTTTTCTCAACCATAAACACAACCGCGGATGAGGCTGCCAACTTTTCCGTGGGATTGAAGAAATACGCGACCAAGCAGGCCAACATTTCTGGGTTTCAGTCACTATACTGTTTGGCTCAGTGCACACCCGATCTGTCCCCGCAAGACTGCAGAAGTTGTCTCAGTGATGTGATTGGAGACCTTCCTTGGTGCTGTCAGGGAAAGCAGGGAGGAAGGGTTCTCTATCCTAGCTGCAACGTTAGGTACGAACTCTACCCTTTCTACCGCCAAGTCGCACCCGCGCCTCCACCCTCATCGCCCCTACTTCCGCCTCCAGCTTCCGCTAATTCCCAAGGAGGCGGTGGGATCTCAACTGGGACCATTGTTGCGATTGTGGTTCCAATTACGGTAGCCGTGCTTCTGTTTATAGTGGGAATTTGTTTCTTGAGTAGAAGAGCTAGAAAGAAGCAGGGTTCTCTAAAGGAAGGAAAAAATGTAGATGACATCACCACTGTGGAATCCTTGCAATTCAGTTTTGGCACGATTTCAGCGGCCACAAACAATTTCTCTGCGGAAAATAAGCTGGGGGAGGGTGGATTTGGTGAGGTTTTCAAGGGTGCTCTTCCGACTGGACAAGAAATAGCTGTCAAAAGACTCTCCAAAAGTTCTGGGCAAGGTGGAGAAGAATTTAAGAATGAAGTGGTGGTGGTTGCCAAGCTCCAACATAGAAATTTAGTGAGGCTTCTTGGGTTTTGCTTGCAAGGAGAAGAGAAGATACTTGTTTATGAATATGTTCCCAACAAAAGTCTCGACTATACTCTCTTTGACCCTGAAAAGCAAAGGGAGTTGGATTGGAGGAGACGTTACAAGATTATTGAAGGGACTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAGAATTATACATCGAGATCTTAAAGCAAGTAACATATTGTTAGATAGTGATTTGAGTCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTTGGAGTTGATCAAACTCAAGGAAACACGGACAGAATTGTAGGAACCTATGGATATATGGCTCCAGAATATGCAATGCATGGAGAGTTCTCTGTTAAGTCTGACGTGTACAGTTTTGGAGTCCTCCTTATGGAGATTATAAGCGGCAAGAAGAATAGTTCTTTCTATCAAACGGATGGTGCTGAGGATCTATTGAGCTATGCGTGGCTACTTTGGAAGGATGGAACACCTTTGGAACTGATGGACCCCATATTAAGAGAATCCTACAATCAGAATGAAATCATCAGAACCATCCATATTGGTCTGCTGTGTGTCCAAGAAGATCCCGAAGACAGACCTACAATGGCAACAATAGTTCTTATGCTAGATAGTAGCACTGTTACTCTACCAACTCCTAAGCGGCCTGCATTTTTCATCCACAGTGGAACTGATACATACATGCCAAAAGGGCAGCAATTTGATCAGTCTATAACAAAATCATTACCAGTTTCTATCAATGAGGTTTCCATTAGCGAAATGGATCCTAGATAA 2001 0.4633 MASLKLVLLLFILSFLNLNTCKAQNQLSDDPVYLYHNCSGGNTTANSAYQLNVGTLFSSLSSKSIEFSNDTVGTSSSDRVYGLFMCRGDVPTALCQQCVLNATRRLRSECSLAKQAVIWYDECTVRYSNRSFFSTVAVRPRVGLLNTANISNQEAFMKLLFSTINTTADEAANFSVGLKKYATKQANISGFQSLYCLAQCTPDLSPQDCRSCLSDVIGDLPWCCQGKQGGRVLYPSCNVRYELYPFYRQVAPAPPPSSPLLPPPASANSQGGGGISTGTIVAIVVPITVAVLLFIVGICFLSRRARKKQGSLKEGKNVDDITTVESLQFSFGTISAATNNFSAENKLGEGGFGEVFKGALPTGQEIAVKRLSKSSGQGGEEFKNEVVVVAKLQHRNLVRLLGFCLQGEEKILVYEYVPNKSLDYTLFDPEKQRELDWRRRYKIIEGTARGIQYLHEDSRLRIIHRDLKASNILLDSDLSPKISDFGMARIFGVDQTQGNTDRIVGTYGYMAPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWLLWKDGTPLELMDPILRESYNQNEIIRTIHIGLLCVQEDPEDRPTMATIVLMLDSSTVTLPTPKRPAFFIHSGTDTYMPKGQQFDQSITKSLPVSINEVSISEMDPR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00056 666 ProSiteProfiles Protein kinase domain profile. 341 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00056 666 FunFam Cysteine-rich receptor-like protein kinase 25 140 246 - -
Vian10g00056 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Vian10g00056 666 Pfam Protein tyrosine and serine/threonine kinase 343 610 IPR001245 GO:0004672|GO:0006468
Vian10g00056 666 Gene3D - 30 132 IPR038408 -
Vian10g00056 666 Gene3D - 141 246 IPR038408 -
Vian10g00056 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 666 - -
Vian10g00056 666 FunFam cysteine-rich receptor-like protein kinase 10 417 619 - -
Vian10g00056 666 Pfam Salt stress response/antifungal 150 244 IPR002902 -
Vian10g00056 666 Pfam Salt stress response/antifungal 38 129 IPR002902 -
Vian10g00056 666 CDD STKc_IRAK 347 613 - -
Vian10g00056 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 31 131 - -
Vian10g00056 666 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Vian10g00056 666 Gene3D Phosphorylase Kinase; domain 1 302 416 - -
Vian10g00056 666 ProSiteProfiles Gnk2-homologous domain profile. 138 246 IPR002902 -
Vian10g00056 666 FunFam Cysteine-rich receptor-like protein kinase 10 303 416 - -
Vian10g00056 666 ProSiteProfiles Gnk2-homologous domain profile. 31 132 IPR002902 -
Vian10g00056 666 SMART serkin_6 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian10g00056 666 SUPERFAMILY Protein kinase-like (PK-like) 326 635 IPR011009 -
Vian10g00056 666 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00056 Vian-Chr10 408579 411584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00056 7 666 Receptor kinase-like Gene Family AT4G05200 55.030 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vian10g00056 PK_Tyr_Ser-Thr 8.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00056 - - vun:114173511 1180.62