Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00049 ATGGCTACCCAACAATCTCTGTTAGAGAAGCCTAAAAAGTCCGTTTCCAAAACTATCTGCTTACTCCTTTCTGTAATTGCAGTTCTGAGTTCATCAGCTTTTCTTGCTTCTTATATCTTCAAACCATCCTCAGTCTTCAACGATTCCTCCCTTAACCATGTCTGTCATCACGCACTTGATACTACATCCTGCTTGGCACATATCTCAGAAGTAACCCAAACTCACACGTTCACCGCAACAAAACGCCACAAGTTCGATTTGCTCAAATCGTTCCTGAAAAAACACGCCTCACATATTGAGAAAGCCATGGGCGAAACCAACGCTATCAGATTCAGGGTCAACAATCCGAGAGAGGAAGCAGCTTTGAAGGATTGTGTGGATCTGATGGAGTTGTCCTTTGACAGAGTTTGGAACTCCATGTTAGCACTGACAAAGCAAACCACCGAGTCGCATCAAGATGCACACACGTGGCTGAGTAGCGTGCTAACTAATCATGCAACTTGCTTGGATGGATTAGAGGGTGCTGCTCGCAGTGTTATGGAGGATGAACTTGAGGACTTGAAATCTAGGTCAAGAACCGCTCTGGCGATTCTTGTTGAGACGGTTTTGCCACCGAAGGTTGAACAGATAATTGACGAACCCCTGAATGGGGACTTTCCCTCGTGGGTCAGCATCAGGGATCGGAGGCTTTTGGAGAGTGGGGTTGGGGACGTCAAGGCCAATGTCGTGGTGGCTCAGGATGGGAGTGGCAAGTTTAAGACTGTCACTGAGGCTGTGGCATCCGCACCGGACAACGGCAATACAAGGTACGTCATTTATGTGAAAAAGGGAACATATAAAGAACACGTTGAAATTGGTAAGAAGAAGAAAAACGTCATGCTCGTCGGTGACGGTATGGATGCAACTATAATCACCGGAAGCTTGAATTTCATCGACGGAACTACAACCTTTAACAGTGCCACCGTTGGTATGTACTGTCTTCCCCGTATATTTCCAGTTTCTCTGTTATGTTTGACCTAA 1020 0.4608 MATQQSLLEKPKKSVSKTICLLLSVIAVLSSSAFLASYIFKPSSVFNDSSLNHVCHHALDTTSCLAHISEVTQTHTFTATKRHKFDLLKSFLKKHASHIEKAMGETNAIRFRVNNPREEAALKDCVDLMELSFDRVWNSMLALTKQTTESHQDAHTWLSSVLTNHATCLDGLEGAARSVMEDELEDLKSRSRTALAILVETVLPPKVEQIIDEPLNGDFPSWVSIRDRRLLESGVGDVKANVVVAQDGSGKFKTVTEAVASAPDNGNTRYVIYVKKGTYKEHVEIGKKKKNVMLVGDGMDATIITGSLNFIDGTTTFNSATVGMYCLPRIFPVSLLCLT 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00049 339 Pfam Plant invertase/pectin methylesterase inhibitor 50 197 IPR006501 GO:0004857
Vian10g00049 339 NCBIfam pectinesterase inhibitor domain 28 197 IPR006501 GO:0004857
Vian10g00049 339 CDD PMEI-like_4 55 199 - -
Vian10g00049 339 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 197 IPR035513 -
Vian10g00049 339 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Vian10g00049 339 Gene3D Invertase/pectin methylesterase inhibitor family protein 46 200 IPR035513 -
Vian10g00049 339 Gene3D - 235 326 IPR012334 -
Vian10g00049 339 SUPERFAMILY Pectin lyase-like 239 324 IPR011050 -
Vian10g00049 339 PANTHER PECTINESTERASE 25 323 - -
Vian10g00049 339 SMART PMEI_2 46 197 IPR006501 GO:0004857
Vian10g00049 339 Pfam Pectinesterase 241 324 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00049 Vian-Chr10 347831 348850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00049 3 323 Carbohydrate Esterase AT1G11580 49.245 9.79e-95 291