Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00026 ATGGGGCACTCCAACGTGTGGAACTCTCATCCCAAGAACTATGGGCCTGGTTCTCGCACCTGCCGCGTGTGTGGGAACCCTCATGGATTGATTAGGAAGTATGGGCTCATGTGCTGTAGGCAGTGTTTCCGTAGCAATGCCAAGGAAATTGGCTTCATTAAGTTACTGGCATCCAAAGAAAAACAAATGGAGCCTATTGAGGAGATCTCTCAAGAATGGATGAGTTGTCTTAGTGAAGTGTACACAGAGGAGGAAGCTGACTTCATGAACCAGCTGCTTGGTAACTGCTCAATCCCTGAACAGTTATACGAAAGTTTGAACATGGAAACAAAAGCTCCAAATGCAGATTCTATCTTGTTTTTACATGGGAGTGGGCCCTGTGATCATGCTACCAAATATATCTTTCCCACAACAAATGCTGGCAACTGCTCCAACAATTTGGGCCACGTGTCCATTGGTTTTTCCTTCCAAGAGTTGGGTCTTGACTCAGGGAGAGAGAATCTTGCCGACATGGATTTGCAGGATCACAATGCACGCCAAGTATTAGTTTCCGAACCAGAAAAGGATAATACCAGAAGCATGGAGAAATCAGAAAAAAGGTTTAGGAGCTCATTTGAGGGCCCAGAGAACAAGAGGAATGTGAAATCTAAGAAGAATCCAAAACCAGCTTCTTTAAGGAACACTGAAGAGGAAGCAATTCCTGACCCTCAGAGTCAGACCTTAAACAGTTGTTGTTCAGATGATGACTCCAAAGATTCTAGAGCACTGAAGTTAAGTGGAAAATCAAGATCTAATAGAGACCCTGCAACTGATCCACAGAGCGCGTATGCAAGAAAGAGAAGAGAAAGAATAAACGAAAGACTGAGAATTCTACAGAACCTAGTCCCAAATGGAACTAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTGCAATATGTGAAGTTTTTACAGCTTCAAATTAAGACACAACAACTGATACTATTTCCCACATTTGAATTTGAACAGCTTCTGAGCTCTGATGACCTGTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGCCTGGAACTTAACATCAACATCACAAAACAAGAAAAAAAATGCATATCATAG 1122 0.4269 MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKLLASKEKQMEPIEEISQEWMSCLSEVYTEEEADFMNQLLGNCSIPEQLYESLNMETKAPNADSILFLHGSGPCDHATKYIFPTTNAGNCSNNLGHVSIGFSFQELGLDSGRENLADMDLQDHNARQVLVSEPEKDNTRSMEKSEKRFRSSFEGPENKRNVKSKKNPKPASLRNTEEEAIPDPQSQTLNSCCSDDDSKDSRALKLSGKSRSNRDPATDPQSAYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKTQQLILFPTFEFEQLLSSDDLWMYAPIAYNGMNIGLELNINITKQEKKCIS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00026 373 PANTHER 40S RIBOSOMAL PROTEIN S29 1 55 IPR039744 GO:0003735|GO:0008270
Vian10g00026 373 Gene3D 30s Ribosomal Protein S14; Chain N 1 55 IPR043140 -
Vian10g00026 373 SMART finulus 274 323 IPR011598 GO:0046983
Vian10g00026 373 MobiDBLite consensus disorder prediction 176 277 - -
Vian10g00026 373 Pfam Ribosomal protein S14p/S29e 7 54 IPR001209 GO:0003735|GO:0005840|GO:0006412
Vian10g00026 373 MobiDBLite consensus disorder prediction 231 246 - -
Vian10g00026 373 Gene3D - 266 326 IPR036638 GO:0046983
Vian10g00026 373 CDD bHLH_AtIND_like 269 345 - -
Vian10g00026 373 Hamap 30S ribosomal protein S14 type Z [rpsZ]. 2 57 IPR023676 GO:0003723|GO:0003735|GO:0006412|GO:0015935
Vian10g00026 373 FunFam Basic helix-loop-helix transcription factor 269 325 - -
Vian10g00026 373 MobiDBLite consensus disorder prediction 181 216 - -
Vian10g00026 373 MobiDBLite consensus disorder prediction 247 261 - -
Vian10g00026 373 FunFam 40S ribosomal protein S29 1 56 - -
Vian10g00026 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 268 317 IPR011598 GO:0046983
Vian10g00026 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 326 IPR036638 GO:0046983
Vian10g00026 373 Pfam Helix-loop-helix DNA-binding domain 278 318 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00026 Vian-Chr10 225456 229494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00026 68 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.534 1.72e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian10g00026 Ribosomal_S14 7.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00026 - - var:108319891 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00026 10 225456 229494 Vian10g00026 10 225456 229494 ECH