Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00012 ATGCCCACCATGAACTTCTTCCTATCTGCTTTATTGCTTCACTCCTTCATGGCTACTGTGTTGGGAAAAGAAGCATCGCATATTATCATGCACAATGGCGGAGGCTATCCTTATGCTTCTCCCCCTCCTCCGATGTGCCCCCCGCCTCCACCCCCACCGTGTCAGACAAGGTTGGAGAATGGTCGACGAACTCTGGTGGACTTCACTGGTTCGGTTGACCGAAACAAATACATCGGTGACTGGAGGGGTGACGACCCTTGCAAATTCAACGGGATACGATGTGCAAAATATCCAGACCCGGAAAAGCAGCTAGCAATTGCGGGAATAGACCTGAACGGAGCTGGGCTGTCTGGGAAAGACCGCACACCTCTGCTCCTGTCGGGGATCTTGGACAAGATACCAGAGCTGACCTTTTTCCACGTGAACTCCAACAACTTCACCGGTGCCATCCCAAGGGAAATAACCCAGTACAAATATTTCTTCGAGTTGGACCTCAGTAACAACAAGCTGAAGGGCGAGTTTCCAAAGGAAGTTCTCCAGTCCTCGCAGCTGGTTTTCCTTGACCTCAGGTTCAACACTCTCTACGGCCCCATACCTCCCCAGCTCTTCTACCTCAAATATCTCGATGTCATTTTCATCAACAACAATAAATTTACTGGCAGTCTCCCCGATGCCTTTGCCTCCACCCCGGCTAGGTACCTCACTTTTGCCAACAACCTTCTCACCGGTCCAATCCCCCCCTCCGTCGGAGCTGCCAAAAACCTCGTCGAAGTCCTCTTCTTGGGCAACAACTTCCAGGGATGCTTGCCCTACCAGATTGGCCTCCTCCGCAAGGCCACCGTCTTTGACGTCAGCAACAACTGTTTGACCGGTCCCATCCCACGCTCCTTCGGCTGCCTGGAGAGCATCCGGTACCTCAACTTGGAGCACAACAAGTTCTACGGTGAAGTTCCCGAAACGGTGTGTCAGCTCCCAGGGCTCCGCGACAGAGGCAACTTCTCCTTATCGAACAACTATTTCACTCAGGTTGGCCCTGCATGCAGGAGGCTGATCGAGTGCAATGTGCTGGACGTGAGCAACAACTGCATCCTTGGCCTTCCCAATCAAAGGCCCCACGGCGAATGCTCCCACTTCTTCTCCAACCTCAAGCCCTGCCCTAATCCAAAGTCTCTCAATTACGTTCCCTGCAAAAAGTACGATCCCAGCAGCCACACCCACACCACCACCTCCACTCCTCCTGCTCCTCTCTCTTACAACTCTCTCGATCCCCGTCTTCATCGCTAG 1284 0.5312 MPTMNFFLSALLLHSFMATVLGKEASHIIMHNGGGYPYASPPPPMCPPPPPPPCQTRLENGRRTLVDFTGSVDRNKYIGDWRGDDPCKFNGIRCAKYPDPEKQLAIAGIDLNGAGLSGKDRTPLLLSGILDKIPELTFFHVNSNNFTGAIPREITQYKYFFELDLSNNKLKGEFPKEVLQSSQLVFLDLRFNTLYGPIPPQLFYLKYLDVIFINNNKFTGSLPDAFASTPARYLTFANNLLTGPIPPSVGAAKNLVEVLFLGNNFQGCLPYQIGLLRKATVFDVSNNCLTGPIPRSFGCLESIRYLNLEHNKFYGEVPETVCQLPGLRDRGNFSLSNNYFTQVGPACRRLIECNVLDVSNNCILGLPNQRPHGECSHFFSNLKPCPNPKSLNYVPCKKYDPSSHTHTTTSTPPAPLSYNSLDPRLHR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00012 427 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 72 412 - -
Vian10g00012 427 SUPERFAMILY L domain-like 102 367 - -
Vian10g00012 427 MobiDBLite consensus disorder prediction 402 417 - -
Vian10g00012 427 Pfam Leucine Rich Repeat 281 299 IPR001611 GO:0005515
Vian10g00012 427 Gene3D Ribonuclease Inhibitor 60 231 IPR032675 -
Vian10g00012 427 FunFam Leucine-rich repeat receptor protein kinase EMS1 128 225 - -
Vian10g00012 427 MobiDBLite consensus disorder prediction 402 427 - -
Vian10g00012 427 Gene3D Ribonuclease Inhibitor 232 422 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00012 Vian-Chr10 135428 136711 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00012 73 380 Leucine-rich Repeat extension Gene Families AT3G24480 43.831 3.35e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00012 - - gmx:100795489 556.599