Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00008 ATGGAGGAAAATGAAATGGTTTGGTGTTCCTCTGATTCTTGTTCTTCTGATTCGGGAGAGGAAGATATCGAAGAACGGAAATCTGATTCTTGTTATTCTGATTCGGGAGAGGAAGATATCGAAGAACGGAAATCGCAGAACGTGGATGCAGTAGTAAGGGGTAATCTTGTCGTGAAGAGACAGTCGCTGCTACCGCGGCTTCTTTCAGTATCGCAAGGGGCGGTCGTGTGTAGAAAACCCTTTAAACCTCCATCTTCCAAAACTCATGCTTCCACTTACAATCAAGACCTCACTCGTAGGCTTTCCGCTCGCAAAAGGTTTGTTCCCTGGGGTTCTTCCTCTCCTATTCCTAGACCTGCGATCTCCGACTTCCAATTCAACGTATCGGTAACTGATGTTGATGTTCCTGTTTCTGAGGAGCCGAAACCATCTCTGCCCCCGGGGATCGACCCTTTAGTACTGTGGCACCCTCAAGACTCCCACGATGACCCCTCTAATACTAATTTTACCACCATTACAGTTGACCCTTTACTTGTTCGTTACCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTCATGTTTGATTGTGTCTCTGGTCTGTGTACCACACCAAATATACATGGATGCATTTTGGCAGATGATATGGGTCTGGGGAAGACATTGCAGTCCATCACATTACTATATACTCTACTTTGTCAAGGGTTTGATGGCAAGCCATTGGTTCGAAAATCTATCATAGTGACTCCTACCAGCCTTGTCAGTAATTGGGAAGCTGAAATAAAAAAGTGGGTTGGTGAAAGAGTTCGTCTTGTCGCTCTATGTGAGAGTTCAAGAGAAGATGTTGTTCTCATTGTTTCATATGAGACATTCCGAATGCATTCTTCAAAGTTTAGCTCTAGTGACTCATGTGACCTTCTCATATGTGATGAGGCTCACAGATTGAAAAATGATCAAACGATAACAAACAGGGCATTGGCAGCTCTTCCCTGCAAGCGAAGAATTTTATTGTCAGGAACTCCCTTACAAAATGATTTAGAAGAATTCTTTGCAATGGTTAACTTTACCAACCCTGGAATATTGGGCAGTATTGCACATTTTCGACGTTACTATGAGGCACCAATTATTTGTGGAAGAGAACCTGCTGCCACTGTTGAAGAGAAGAAGATAGGTGCTGAACGCTCTGCTGAATTAAGTGTCAATGTTAATAGGGTGAAGAGGGCAATTACTGAAGAACTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAATTGTGCAATCATCCAAAGCTTATCTATGATACCATACGAAGTGGCAGCCCAGGAACTTCAGGTTTTGAGGAGTGTATCCGATTCTTCCCTCCTGAAATGTTATCTGGAAGGTCTGGCTCGTGGACCGGAGGACATGGAGCATGGGTTGAACTATCCGGGAAAATGCATGTCTTGGCAAGATTACTTGCTCATTTACGTCACAGAACTAATGACCGCATTGTCCTTGTCTCAAACTACACTCAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTAAATTTGATCGGTGGAAATCGACTTGTCTTGTTTGATCCTGATTGGAACCCAGCAAATGATAAACAAGCTGCAGCAAGAGTATGGAGGGATGGACAGAAGAAAAGAGTTTATATTTATAGATTTTTGAGTGCTGGAACTATAGAAGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTGCAAAAGGTCATTCAGCAAGAGCAAACTGATAGCCTTGTGTCACAGGGTAACTTTCTTTCAACAGAGGATCTTCGTGATTTGTTTACTTTTCATGAAAACATCAAGTCAGAGATTCATGAAAAGATGCGATGCAGTCGATGTGAAACACATGGTGGTCCTCAAAGCACTGATGCCCAATCAACAGCAGCTAATGAATCTGGAGAAGAAAACTCCGATATAGGTGGATTTGCAGAAATTGCTGGCTGCTTACAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGAGCCCATTGGAAGAAGATTTAGGAAGTTGGGGCCATCACTTTTTACCTAATTCAGTACCAGATGCCACCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTAACGGACGACTGGTACCCATCGAGTCTAAGATGAGTCCCAAGCTACAGAAAAAGGAACCAAATAAGGAATTACTCAAATCAATGCCCACTCCTATTTCTTTGCAGAACAGATTACCGCTGCAGTCTGCTTCTGGTGTTGCCAGTATGTCATCATCCACTCCCAATGTAAATTCTATGGGGATTAGAAAAAACATCTCCAATTACTCTCTTGTTAGTAAAGTATTACCACACAAAAGATCACGTCCTGCTGATATCAGTTATAGTAATTTTAAGTAA 2430 0.4259 MEENEMVWCSSDSCSSDSGEEDIEERKSDSCYSDSGEEDIEERKSQNVDAVVRGNLVVKRQSLLPRLLSVSQGAVVCRKPFKPPSSKTHASTYNQDLTRRLSARKRFVPWGSSSPIPRPAISDFQFNVSVTDVDVPVSEEPKPSLPPGIDPLVLWHPQDSHDDPSNTNFTTITVDPLLVRYLRPHQREGVQFMFDCVSGLCTTPNIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPLVRKSIIVTPTSLVSNWEAEIKKWVGERVRLVALCESSREDVVLIVSYETFRMHSSKFSSSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGSIAHFRRYYEAPIICGREPAATVEEKKIGAERSAELSVNVNRVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEECIRFFPPEMLSGRSGSWTGGHGAWVELSGKMHVLARLLAHLRHRTNDRIVLVSNYTQDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDSLVSQGNFLSTEDLRDLFTFHENIKSEIHEKMRCSRCETHGGPQSTDAQSTAANESGEENSDIGGFAEIAGCLQNLKRSEKQVGSPLEEDLGSWGHHFLPNSVPDATLQASAGDEVTFVFTNQVNGRLVPIESKMSPKLQKKEPNKELLKSMPTPISLQNRLPLQSASGVASMSSSTPNVNSMGIRKNISNYSLVSKVLPHKRSRPADISYSNFK 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00008 809 CDD DEXHc_RAD54 182 403 - -
Vian10g00008 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 631 IPR027417 -
Vian10g00008 809 SMART helicmild6 482 554 IPR001650 -
Vian10g00008 809 MobiDBLite consensus disorder prediction 630 655 - -
Vian10g00008 809 PANTHER SNF2/RAD54 FAMILY MEMBER 404 507 - -
Vian10g00008 809 MobiDBLite consensus disorder prediction 1 44 - -
Vian10g00008 809 Gene3D - 401 467 - -
Vian10g00008 809 Pfam Helicase conserved C-terminal domain 490 553 IPR001650 -
Vian10g00008 809 Gene3D - 504 656 IPR027417 -
Vian10g00008 809 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 398 IPR027417 -
Vian10g00008 809 Gene3D - 155 400 IPR038718 -
Vian10g00008 809 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 200 358 IPR014001 -
Vian10g00008 809 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 403 604 IPR001650 -
Vian10g00008 809 MobiDBLite consensus disorder prediction 20 44 - -
Vian10g00008 809 CDD SF2_C_SNF 477 565 - -
Vian10g00008 809 FunFam DNA repair and recombination protein RAD54 151 406 - -
Vian10g00008 809 Pfam SNF2-related domain 185 377 IPR000330 GO:0005524|GO:0140658
Vian10g00008 809 SMART ultradead3 178 366 IPR014001 -
Vian10g00008 809 MobiDBLite consensus disorder prediction 633 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00008 Vian-Chr10 105521 117692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00008 486 612 RAD5 or RAD16-like Gene Family AT5G43530 36.220 8.70e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian10g00008 SNF2_N 9.7e-37 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00008 K10875 - gmx:100781631 1258.43