Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04521 ATGGAAGGATTGGATGGAATAATAGAGAGGCTTTTGGAAGCAAAGAATAATAGGGGCAAGCGGATTCAACTTGTGGAGTCAGAAATTCGCAATCTTTGCATCAAAGCAAAAGAAGTTTTCCTCAACCAGCCAAACCTACTTGAATTAGAGGCTCCAATCAACATTTGTGGCGATATACACGGGCAATATCCTGACCTATTGCGTCTATTTGAGTATGGTGGGTTTCCTCCAGATTCGAATTACCTATTTCTTGGGGATTACGTGGATAGAGGAAAACAAAGTATAGAAACAATATGCCTCCTACTATCATATAAGATCAAATTTCCAGAGAACTTTTTCCTTCTTAGAGGAAACCACGAATGTGCATCTATTAATAGAATTTATGGATTTTATGATGAGTGCAAGCGAAGATTCAGCGTTCGCTTATGGAAGGTATTTACAGATTGCTTCAATTGTTTGCCTGTAGCTGCAGTGATTGATGATAAAATTCTATGCATGCATGGTGGCCTTTCTCCCGATATGGAGAGCTTGAATCAAATCAAAGCTATAGAAAGGCCATTGGATGTTCCAGATCAGGGCCTCTTATGTGACCTCCTTTGGGCTGATCCAGACACAGAAATTAAAGGGTGGGGAGAGAATGATCGCGGTGTTTCCTACACATTTGGACCGGACAAGGTAGATGAGTTCTTGAAGAAACATGATCTTGATCTTATATGTCGTGCTCATCAGGTTGTTGAAGATGGCTACCAATTCTTCGCAGACAGACAACTAGTTACAATATTTTCAGCACCAAATTATTGTGGAGAGTTCAATAATGCAGGTGCACTTATGTGCGTCGATGAAACTTTACTTTGTTCATTCCAAATTCTCAAACCCACGAGAGGAAAGTAA 891 0.4018 MEGLDGIIERLLEAKNNRGKRIQLVESEIRNLCIKAKEVFLNQPNLLELEAPINICGDIHGQYPDLLRLFEYGGFPPDSNYLFLGDYVDRGKQSIETICLLLSYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFSVRLWKVFTDCFNCLPVAAVIDDKILCMHGGLSPDMESLNQIKAIERPLDVPDQGLLCDLLWADPDTEIKGWGENDRGVSYTFGPDKVDEFLKKHDLDLICRAHQVVEDGYQFFADRQLVTIFSAPNYCGEFNNAGALMCVDETLLCSFQILKPTRGK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04521 296 CDD MPP_PP1_PPKL 4 292 - -
Tsu08g04521 296 Gene3D - 2 296 IPR029052 -
Tsu08g04521 296 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 296 - -
Tsu08g04521 296 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 296 - -
Tsu08g04521 296 ProSitePatterns Serine/threonine specific protein phosphatases signature. 115 120 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 81 108 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 256 272 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 52 79 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 114 138 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 148 174 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 177 204 IPR006186 GO:0016787
Tsu08g04521 296 PRINTS Serine/threonine phosphatase family signature 234 254 IPR006186 GO:0016787
Tsu08g04521 296 SMART pp2a_7 24 294 IPR006186 GO:0016787
Tsu08g04521 296 Pfam Calcineurin-like phosphoesterase 53 244 IPR004843 GO:0016787
Tsu08g04521 296 SUPERFAMILY Metallo-dependent phosphatases 20 293 IPR029052 -
Tsu08g04521 296 Pfam Serine-threonine protein phosphatase N-terminal domain 4 50 IPR031675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04521 Tsu-Chr8 62880030 62881285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04521 31 240 Calmodulin-binding Proteins AT5G63870 30.400 4.31e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04521 K06269 - gmx:100804212 576.63