Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04513 ATGATGAAATTTGTTTTGGTTATCAAGGGTGACCAGATTCAGGTACTTTTACCGTCTGAAATTTGCCCAATGTGGAAGACATCTTTAAAAGAAGGTGAAACATATGTCATGAAAAACTTCAAAGTTCATAAAAACGACTTTTCTGTGAGGTCATGTGTCCATCCTTTTAAGTTAGTCTTTGTTGGAGGGACCGGAGGTTCAAAAATCACTCCGTTACCCATGCCTGATATCCCTCATTATAAACTTCATTTCAAGCCATTTCCTGAAATCATGGTTGACAAATATCGCCATGATCTTTTAGTTGACATTATTGGAGCTGTTTACAATATCAAACCTTCAAAGCAAAGTGCTGGAGGGAAAAAACAACCTACAAGATTTTCTTTGAGAGATGCAgaTATGAATGATTTACCCTGTACTTTGTGGGGTGATTTTGGAACTCAATTCATGGACTTTTTCAATGCAAAATCTGATGATGGACCAATGATCATTGTTATTAAGCATGCTCAAATCAAAGAACCCCAAGGTCAATATGATTTATGCATTTCAAATGCATGGACTGGAAGTAAATTAATGTTGGATCCTCATTTAAAGGAAATATGTGATTTCAAAAAAAGTTTGCCTGCTACCTTTGGAAGTCCAACTCTAATTGAAACACAAGCAATTTCTGGAAATATGCAGTCATCACAAAACTCTCAAGCTTCTCAGTATTCAGTTCCATCACGCTATGCCTTTAATGCACCTCCTAAACATATTTCTGAACTTATGAGTTGTGCTAATGATGAAGTTGTTACAACTGTTGGAACCCCGCACCATGTCTTGACTGCAAAACACGGTTGGTTCCTCTTAACGTGTGCTGATTGTAAGAAACAAATAATGACCACCTCTCCGCCATACAAATGCTCCAAACATCATGTTACCCCTGATCCACAAATCAAATACAAAGTTCATGTTGAAGTCCGTTTTCAAGGTCATAAGGCAGAGTTTGTTTTTTGGGACCGTGAATGCCAACAATTGATTGGAAAAACTGCCGAGGAATTGAAAACCATTATGATTGAGGCTGGCGAATTTGATCGACATGAATATCCTGCTGCACTGGATGACATGATGGGCAAGGAGCTTGCATTTAAAGTCAAGGCACAACCCCACTACAAACTTGTCTTGGTTCTTAACTACAAAACTGAGGAAGCTATTATTCAATATCTCAAAGATCAAATTCCAAGCAATGAGATTACGTCTCAGTTAATTGTTGAACCTCCACTCTCTCAAGAGgtAGTTTAG 1278 0.3779 MMKFVLVIKGDQIQVLLPSEICPMWKTSLKEGETYVMKNFKVHKNDFSVRSCVHPFKLVFVGGTGGSKITPLPMPDIPHYKLHFKPFPEIMVDKYRHDLLVDIIGAVYNIKPSKQSAGGKKQPTRFSLRDADMNDLPCTLWGDFGTQFMDFFNAKSDDGPMIIVIKHAQIKEPQGQYDLCISNAWTGSKLMLDPHLKEICDFKKSLPATFGSPTLIETQAISGNMQSSQNSQASQYSVPSRYAFNAPPKHISELMSCANDEVVTTVGTPHHVLTAKHGWFLLTCADCKKQIMTTSPPYKCSKHHVTPDPQIKYKVHVEVRFQGHKAEFVFWDRECQQLIGKTAEELKTIMIEAGEFDRHEYPAALDDMMGKELAFKVKAQPHYKLVLVLNYKTEEAIIQYLKDQIPSNEITSQLIVEPPLSQEVV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04513 425 SUPERFAMILY Nucleic acid-binding proteins 249 381 IPR012340 -
Tsu08g04513 425 CDD RPA1_DBD_B_like 102 207 - -
Tsu08g04513 425 PANTHER REPLICATION FACTOR A 1, RFA1 25 341 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu08g04513 425 Gene3D - 75 210 IPR012340 -
Tsu08g04513 425 SUPERFAMILY Nucleic acid-binding proteins 83 208 IPR012340 -
Tsu08g04513 425 Gene3D - 1 65 IPR012340 -
Tsu08g04513 425 Pfam Domain of unknown function DUF223 9 100 IPR003871 -
Tsu08g04513 425 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 25 341 - -
Tsu08g04513 425 Gene3D - 234 403 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04513 Tsu-Chr8 62808885 62811657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04513 78 383 Core DNA Replication Machinery Family AT5G08020 22.540 3.31e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04513 - - lang:109343677 234.958