Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04507 ATGGCTACTTCTTTGCTCCACCCAAATCCAACTCCAACTGCTATCACTACACTtaaacaccaccaccaccatcctTCCTTAAAACCCACCATTCCACCACACAATGTTTCTTTCTTAACTAACACTAACCGTTTAAACACCAACACTACAAAGTGTAATGCATTCTTTGATTACAATGTGGTCAACAGTTTGTTGGATGTTGGTGGGGACAAGTTTCCTACTTTCCTCCGATCATTACTTCTTGAGTTTGAAGACTTATCAGACATGCAAAGATGGGAGTCTGTTTTGTTTGGCAGTCTAATATGGATTTACTTAACATCAAGACCAGGTGTTCTTATTGGTGCTATCGATGCTTACCTTCTTGCTCCTCTTCAACTTGGTTTTGACAATCTATCTGGTAGGAGAAATTTGAAGACTGCTGATTTTCTTGTTGGAAATAAAATTGGTGAAGGCTCCTTTGGTGTTGTTTATTCTGgtgttttagtccctaaaaatgTCACGGTAGATCAAGATGTCACCAAGAGAGGAAGATCCAaggtaacaacaacaacaaggttgGATGCTAAATCTAAGGATAAAGTCATTCTCAAAAAGGTTAAGGTTGGAATTAAAGGGGCTGAAGAATTTGGTGAATTCGAGGAGTGGTTCAATTACAGACTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCTTACTCTTGGCGATTACATCAAAGACCGCAACTTCCCTTCAAATTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGTGTTGATTCTTCTAGACGAAATGCATTGATTATCAAGCAAATTATGCGCCAGATAATTACTTCTCTTAAGAAAATTCACGATACAGGCATTGTTCATAGAGATATAAAGCCAGCCAACTTAGTTGTTACTAAAAAGGGGCAGATTAAACTCATTGATTTCGGTGCAGCGACTGACCTTCGGATCGGAAAGAATTATGTTCCTGACCGCACCCTTTTGGATCCTGACTATTGCCCCCCAGAACTATATGTACTCCCAGAAGAAACACCGAGTCCTCCACCAGCACCAATTGCTGCGTTCTTTTCTCCAATACTATGGCAGTTAAACAGCCCAGATCTTtttgatatgtattctgctggGATTGTACTCCTACAAATGGCAATACCAACCTTAAGGTCTCCCGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACATGTGgttatgatttaaaaaaatggagggagtttACTCGACTTAGGCCCGACTTCCAAATTCTTGACAGCGAATCTGGTAGAGGTTGGGACTTGGCAACAAAGCTTATCTCTGAGAGAGGTCCCTTAAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTTGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTCAAGTAGAAAGTGA 1524 0.3753 MATSLLHPNPTPTAITTLKHHHHHPSLKPTIPPHNVSFLTNTNRLNTNTTKCNAFFDYNVVNSLLDVGGDKFPTFLRSLLLEFEDLSDMQRWESVLFGSLIWIYLTSRPGVLIGAIDAYLLAPLQLGFDNLSGRRNLKTADFLVGNKIGEGSFGVVYSGVLVPKNVTVDQDVTKRGRSKVTTTTRLDAKSKDKVILKKVKVGIKGAEEFGEFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDLTLGDYIKDRNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKKGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREFTRLRPDFQILDSESGRGWDLATKLISERGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSSSRK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04507 507 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 504 - -
Tsu08g04507 507 SMART serkin_6 142 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04507 507 Gene3D Phosphorylase Kinase; domain 1 129 255 - -
Tsu08g04507 507 ProSiteProfiles Protein kinase domain profile. 142 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04507 507 SUPERFAMILY Protein kinase-like (PK-like) 138 489 IPR011009 -
Tsu08g04507 507 Gene3D Transferase(Phosphotransferase) domain 1 286 490 - -
Tsu08g04507 507 Pfam Protein kinase domain 295 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04507 507 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 504 IPR044803 GO:0004674|GO:0009579
Tsu08g04507 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 315 327 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04507 Tsu-Chr8 62767631 62775677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04507 138 344 MAP Kinase Kinase Kinase AT3G13530 25.943 1.35e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Tsu08g04507 Pkinase 8.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04507 - - mtr:MTR_8g005720 766.533