Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04506 atGGATCATGATAGAGATGAGGCAATGGAGGAGCTAGTGAGAGGGCGTGAGTGTGCAAACAAGCTTGGACAAGTATTAGCAGCAGTcatgaaaaataatagtaatcaTGGTGAGTTGGCAGCATCAACCTCATTAGTAAACAACATTCTCAACTCATTTACCAATACCCTTTTCCTTTTGAAAAAACATCATCAGATGCAACTAAAAAGGGACTTTTCCTTCATCACTCCAACTAAATCTCCTCATGAGGACACTTCCACCGCTGCTGCTGGTAGAGGATCTTACAAAAGAAGaAAAACTACAGAAACATGGGACAAGATTTCAGAAAGTCCAATAGATGATGGGCATCAGTGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATATTCAAGggaCTACTATAGATGCACTCACAAGTTAGATCAAAGATGTGAAGCAACGAAGCAAGTGCAGAGAGTTGAAGAGAAGCCTGCCTCGTATAAAACCACCTATTACGGCCACCACACTTGCAAAAACACAGATGAAATTATATTTGAACCTACTTCTCCTCTTTCTCACACTAATTCTTCCTCCATATTGCTTAGCTTTAACAATGCATACCCAACTCCAAACAAACAAGATTGTCCCTTTTTATCATCCTCACCCTCTCAGGATGAATTCATGTCCTCCCCTTTAGATACTACTAGTactttatcatcatcatcatcatcggcTAAACATGAATCCGATGATCATAAggatatgatgatgatgatgtatgGTCTCTTGTATGATTCTGTTGATCAGCTTGACCATCATGATCATTCCTTTCACCCTTTTCTTGGTCTTTTATAG 840 0.3631 MDHDRDEAMEELVRGRECANKLGQVLAAVMKNNSNHGELAASTSLVNNILNSFTNTLFLLKKHHQMQLKRDFSFITPTKSPHEDTSTAAAGRGSYKRRKTTETWDKISESPIDDGHQWRKYGQKTILNSKYSRDYYRCTHKLDQRCEATKQVQRVEEKPASYKTTYYGHHTCKNTDEIIFEPTSPLSHTNSSSILLSFNNAYPTPNKQDCPFLSSSPSQDEFMSSPLDTTSTLSSSSSSAKHESDDHKDMMMMMYGLLYDSVDQLDHHDHSFHPFLGLL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04506 279 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 268 - -
Tsu08g04506 279 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 268 IPR044810 GO:0003700
Tsu08g04506 279 SUPERFAMILY WRKY DNA-binding domain 108 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g04506 279 ProSiteProfiles WRKY domain profile. 107 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g04506 279 SMART WRKY_cls 112 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g04506 279 MobiDBLite consensus disorder prediction 209 239 - -
Tsu08g04506 279 Pfam WRKY DNA -binding domain 113 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g04506 279 MobiDBLite consensus disorder prediction 209 245 - -
Tsu08g04506 279 MobiDBLite consensus disorder prediction 78 97 - -
Tsu08g04506 279 Gene3D WRKY domain 98 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04506 Tsu-Chr8 62750923 62752437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04506 7 177 WRKY Transcription Factor Family AT3G56400 33.514 1.38e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu08g04506 WRKY 8.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04506 - - cam:105852555 254.603