Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04489 ATGTTGGACTATGAATGGGGTAACCCATCAAACATCATGCTTACTGGAAATGAAGACAACTCCTCCACCGCTGCTACCGATCAAGCCCACCGTCAAATCTTCGACCACTATGCTTCTCAAGCCATGTTATCCGACAACTACCTAAACGGGCCTGGGCCCACTATTAACACAAACACTGGCGATTTTACCCACCATCACCATCATCAGCAGCAGCATAACTTTAACCCACAAGCCCAACAGCAGCAACATCATATTCATCACTCTTTCTTCGACCCACGCGCTTTCCATGGCGGGTCTTCAACTGGTTCTTACCCACCACCACAACCTCAACCTCCTTCCATGCTTTCTCTCGACCCTCTTTCTGGTCATCATGGACATGGGTCTGGATTCCTTCTCGTGCCCAAGTCTGAGGACCTTAATAGGCCCATGGACTTTGTCGGCTCGAGAATTGGACTCAACCTTGGTGGCCGCACTTACTTTTCGTCTTCTGAAGATGACTTTGTGAGCCGCCTTTATCGTCGGTCTAGACAGCCTGAACCGGGTTCATTGGGTTCTTCAAACTCGCCAAGGTGTCAGGCTGAAGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTATCACCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCCGCCACCGTCATAGCCGCTGGGTTGACTCAACGATTCTGCCAGCAATGCAGCAGgTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCCGGAGAAAAACTCAACACCCAAATACTCAAGATATTAACAAATCTCACAACACTTCAGAAAATGCTGCTACAAGGTCCCCACCGGAGTCGGGAACTCAATCTTCATCTTCGGTGACGGTGGCCGTTTCTCCACCGGATTATTTTCGACAAAGGTCTTACCAAAGCCAAAGCCCTACAACAACATCAAACTCATTGTTTTTCTCCAGCGGGTAG 996 0.489 MLDYEWGNPSNIMLTGNEDNSSTAATDQAHRQIFDHYASQAMLSDNYLNGPGPTINTNTGDFTHHHHHQQQHNFNPQAQQQQHHIHHSFFDPRAFHGGSSTGSYPPPQPQPPSMLSLDPLSGHHGHGSGFLLVPKSEDLNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQPEPGSLGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDINKSHNTSENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSQSPTTTSNSLFFSSG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04489 331 SUPERFAMILY SBT domain 189 268 IPR036893 GO:0003677|GO:0005634
Tsu08g04489 331 Gene3D - 181 252 IPR036893 GO:0003677|GO:0005634
Tsu08g04489 331 MobiDBLite consensus disorder prediction 255 331 - -
Tsu08g04489 331 MobiDBLite consensus disorder prediction 271 331 - -
Tsu08g04489 331 ProSiteProfiles Zinc finger SBP-type profile. 188 265 IPR004333 GO:0003677
Tsu08g04489 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 70 315 - -
Tsu08g04489 331 SUPERFAMILY beta-sandwich domain of Sec23/24 51 310 - -
Tsu08g04489 331 Pfam SBP domain 191 264 IPR004333 GO:0003677
Tsu08g04489 331 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 70 315 IPR044817 GO:0003677
Tsu08g04489 331 MobiDBLite consensus disorder prediction 51 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04489 Tsu-Chr8 62622293 62625171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04489 1 238 SBP-box Gene Family AT1G02065 46.586 6.06e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu08g04489 SBP 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04489 - - lja:Lj3g3v0499510.1 427.557