Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04486 ATGGCTTCTGCTAGCCTTGGAAATGGTGCTGCTGGTGTCGGCAGTAGTTCCAGGTCTGCTGCCTTAAGAGGTTCATCCAGTTCTGTTGATTGGCTTGGTAGAGAGATGCTTCAGATGAAACTCAGAGATAAACTCCACCATGATGACGATGACGACGATGATGATGGCAGAGAGAGTGAGCCTGATATCATTGATGGTGTGGGTGCTGAAACAGGACATGTAATAAGAACCAGTATCGGTGGTGGACGAAATGGTCAATCTAAGCAGAACGTTAGTTATATCGCGGAACATGTAGTTGGGACGGGCTCTTTTGGCACTGTTTTTCAAGCAAAATGTAGAGAAACAGGAGAGATTGTTGCCATTAAGAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGACCATCCAAATATAGTTGCCCTGAGGCATTGTTTCTTTTCGACCACTGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACGGTCAATCGTGTTGCCAGGAACTACAGCAGGATTAATCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCACTTGCTTATATACATAATTGCATTGGCATCTGTCACCGCGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGTAGTGCGAAAGTGTTGGTGAAAGGAGAACCTAACGTTTCGTATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCGACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGCGTAATGGCTGAATTACTTCTTGGACAGCCCTTGTTTCCTGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCTCCAGAAGCTGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCCTTCTTTGATGAATTGAGGGACCCAAGCACCCGCCTTCCCAATGGTCGCCCACTGCCTCCACTCTTTAACTTTAAACCTCAGGAACTTTCTGGTATTCCACCCGATGTCATCAACCGGCTTATTCCAGAACATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAg 1296 0.436 MASASLGNGAAGVGSSSRSAALRGSSSSVDWLGREMLQMKLRDKLHHDDDDDDDDGRESEPDIIDGVGAETGHVIRTSIGGGRNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRVARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPSTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04486 431 Gene3D Transferase(Phosphotransferase) domain 1 173 421 - -
Tsu08g04486 431 MobiDBLite consensus disorder prediction 1 27 - -
Tsu08g04486 431 Gene3D Phosphorylase Kinase; domain 1 79 172 - -
Tsu08g04486 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Tsu08g04486 431 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 428 - -
Tsu08g04486 431 Pfam Protein kinase domain 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04486 431 SMART serkin_6 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04486 431 MobiDBLite consensus disorder prediction 42 67 - -
Tsu08g04486 431 SUPERFAMILY Protein kinase-like (PK-like) 92 404 IPR011009 -
Tsu08g04486 431 MobiDBLite consensus disorder prediction 1 26 - -
Tsu08g04486 431 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 428 - -
Tsu08g04486 431 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04486 431 ProSitePatterns Protein kinases ATP-binding region signature. 99 123 IPR017441 GO:0005524
Tsu08g04486 431 CDD STKc_GSK3 88 380 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04486 Tsu-Chr8 62567060 62572494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04486 99 385 Core Cell Cycle Gene Families AT1G76540 35.254 1.23e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tsu08g04486 Pkinase 1.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04486 K03083 - gmx:100799387 781.941