Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04484 atgGAGAAAACCGGTGATGAGTCTCCGATGAATAAAGTAAAATTCCTTTGCAGTTATGGCGGAAAGGTTCTTCCAAGACCCTCCGATGGGGTCCTTAAGTATGTCGGTGGCGAGACTCGCGTCGTCTGTGTCCCTCGTGACGTCACTTTCTCAGAGATGATGAAGAAGGTGAATGGCATGGTTGACGGAGAGGTGGTGTTCAAGTACCAGGTGATCCCCGAAGAACTTGATGCATTGGTAACAGTTAGAACAGATGAGGATCTGAAGCACATGATTGAGGAACACGATCGCCACGGGACCAGTGGATCCCCATTACTTCGCACATTTCTATTCCCTTCAAAGCCGCTTTTGGTTGACACACAGATTCATATGCAAGGGCAACCAGCAGCACCACATCCAGTTCTATCTGTTGAACCATATTGGTTAGAGCAACGTTACTTTGATGCCATCAATGGAATAGTCAGGTGGACAAGCCCCAGGTCTAGGTATGGGCCGCACTCTGCATGTTCTTCACCAAAATCAATCTCTCCAGATGGACATACTAACGCCGAATCGCCCTTCCACCCCGGTTTACAGCAGTTACAGCAGGGTAATACAATGCAAAGAGTGAGAAGCTCGCCAAGTCTATCCAACCTAACAAGCACCAGCAGCAACAATACACAATCATCACAGCAGCCGCTTGATCACGGTGTTTGCAGTAGTAATAGTCATTCTTTACAAAAAAGTAGTAGTTGTCATCATTATCACCATCACCCCCCTCCTGTTGGATTTAGACCCATACAAGAACAAGGGATAGGAATGGGGATGGGAAGGTCATCTCCATGgaatatgaatatgatgatagataataataataatttgagtagTAACACTAGCAGCAGTAGGGGTACTAATTACTATTACTCCACTGCAAACAGACCCTATAAAGCTTATCCACACCATGATGACTCTGCTGGTCATATTAAGGTTGAAAGAGTTCACTCCGTCCCCCGAAGCCCAAAAATGTCTATATGGGAATGA 1020 0.4461 MEKTGDESPMNKVKFLCSYGGKVLPRPSDGVLKYVGGETRVVCVPRDVTFSEMMKKVNGMVDGEVVFKYQVIPEELDALVTVRTDEDLKHMIEEHDRHGTSGSPLLRTFLFPSKPLLVDTQIHMQGQPAAPHPVLSVEPYWLEQRYFDAINGIVRWTSPRSRYGPHSACSSPKSISPDGHTNAESPFHPGLQQLQQGNTMQRVRSSPSLSNLTSTSSNNTQSSQQPLDHGVCSSNSHSLQKSSSCHHYHHHPPPVGFRPIQEQGIGMGMGRSSPWNMNMMIDNNNNLSSNTSSSRGTNYYYSTANRPYKAYPHHDDSAGHIKVERVHSVPRSPKMSIWE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04484 339 MobiDBLite consensus disorder prediction 161 261 - -
Tsu08g04484 339 SMART PB1_new 27 113 IPR000270 GO:0005515
Tsu08g04484 339 Pfam PB1 domain 32 112 IPR000270 GO:0005515
Tsu08g04484 339 Gene3D - 33 112 - -
Tsu08g04484 339 PANTHER OS05G0427100 PROTEIN 6 306 - -
Tsu08g04484 339 PANTHER OS05G0427100 PROTEIN-RELATED 6 306 - -
Tsu08g04484 339 SUPERFAMILY CAD & PB1 domains 28 115 - -
Tsu08g04484 339 CDD PB1_UP2 16 111 - -
Tsu08g04484 339 MobiDBLite consensus disorder prediction 163 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04484 Tsu-Chr8 62560842 62561977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04484 12 160 MAP Kinase Kinase Kinase AT5G57610 44.667 4.53e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04484 - - mtr:MTR_2g005700 437.573