Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04481 ATGCTAAACAAAACATATTCCAACATGATCCCTTTTACCTTAATTGTTTTTACTCTGTTTTCCTCTGTTTTTGCTTCATCCTTGCTCACTGATTTTCATGCTCTAGTCACACTTAGAGAAGGATTTCAATTCCCAAACCCAGTTATAAACACATGGAACACTTCCAATTTCACCTCAGTTTGTTCATGGGTTGGAATTCAATGCCATGAGGGTCGAGTTGTCTCGGTTGACTTAACAGATTTGAATCTGTTTGGCTCTGTTTCACCTTCAATTACATCACTTGATAAACTCACACACCTTTCCCTTTCAGGCAACAACTTCACCGGCACCATTCACATCACAAACTTAACCAGCCTTCAATTTCTAAACATTTCCAATAACCAGTTTAGTGGTCACATGGATTGGAACTACTCCACCATGGAAAACCTTCAAGTTGTTGATGTCTATAACAATAACTTCACTTCCTTGCTTCCATTGGGACTAGTTAGTTTGAAGAAAAGCCTCAAATACTTGGATCTTGGTGGTAACTTTTTCTACGGCGAAATACCGAAAAGCTATGGAAAATTTGTGTTTCTTGAGTATCTGTCACTAGCTGGAAATGATATTAGTGGGAAAATCCCTGGTGAGTTGGGGAATCTGAGTAACTTGAAAGAGATTTACTTGGGATATTACAATTCTTATGAAGGTGGAATTCCAAAGGAGTTTGGAAAGTTAACAAATTTGGTTCACATGGATCTTTCAAGCTGTGATTTAGATGGTTCAATACCAAAAGAGTTAGGTAACTTGAAAGAACTCAACACACTTTACTTGCATATAAACCAACTTTCAGGTTCAATCCCAAAACAACTTGGTAACTTGACAAACTTGCTCTACCTTGACCTTTCAAGCAATGCACTCACAGGTGAAATCCCTTATGAGTTCATCAACCTTAACCGTCTCAAgcttttcaatcttttcttgaaCAGGTTACATGGTTCTATACCTGACTACATTGCAGATTTTCCTGATTTAGACACACTTGGACTTTGGATGAACAACTTTACAGGTGAAATTCCACACAAACTTGGTCTTAATGGAAAGCTTCAAATACTTGACTTGTCCTCTAATAAACTCACTGGTGTCATTCCATCGCATCTTTGTTCCTCAAACCAGCTTAAGATTTTGATTCTTCTCAATAATTTTCTCTTTGGTCCCATACCTGAAGGCCTAGGAACATGTTACACTCTCACAAGAGTGAGGTTAGGAGAGAATTACCTTAATGGTAGCATACCAAATGGTTTTCTTTACCTTCCTAAGCTAAATTTAGCAGAgttgaaaaataattacttGTCAGGAGAATTGTCAGAAAATGGTAATAGTTCCTCTATGCCTGTTTGTTTAGAACAACTTGATTTGTCAAACAATGCCTTGTCTGGTCCTTTACCACATTCCCTCTCAAATTTCACTTCCCTTCAAATCCTTTTGCTTAGTGGAAACCAATTCTCAGGTCCAATTCCAAGTTCAATTGGAGGACTAAATCAAGCGCTGAAGCTCGACCTTAGCAGAAACTCACTATCCGGTGAAATTCCGCCCGAAATTGGATTTTGTGTTCATCTTACCTACCTTGACATGAGCCAGAACAATCTCTCTGGCTCCATCACACCATTGATTTCCAACATCCGTATTTTGAATTACTTGAATTTGTCTAGAAACCATTTGAACCAAACCATACCAAGATCAATAGGGACAATGAAAAGCCTCACAGTTGCTGATTTCTCATTCAATGAATTCTCCGGTAAGTTGCCCGAGTCAGGTCAATTTGCATTCTTTAATGCTTCTTCGTTTGCGGGCAATCCTAAACTATGTGGTTCTCTATTGAACAATCCATGTAAGCTGGCAAGAATGAAATCCACACCAGGAAAAAGTTCTGCAGATTTCAAGCTGATATTCGCGCTAGGACTATTGATGTGTTCCTTAGTTTTTGCTATTGCAGCCATTATAAAAGCCAAGTCATTTAAAAAGAAAGGACCTGGTTCTTGGAAAATGACTGCTTTTCAAAAGCTCGAATTCACGGTTTCGGACATCCTCGAATGCGTTAAAGATGGGAATGTGATTGGAAGAGGAGGTGCAGGGATTGTTTACCATGGAAAAATGCCAAATGGGATGGAAATAGCAGTGAAAAAGCTACTTGGGTTTGGTGCAAATAGCCATGATCATGGTTTTAGAGCTGAAATTCAAACACTTGGAAACATAAGACACCGAAACATAGTGAGACTACTTGCATTTTGttcaaacaaagaaacaaatttaCTTGTGTATGAATACATGAGAAATGGGAGTTTAGGTGAGGCATTGCATGGGAAAAAAGGTGGATTCTTGAGTTGGAATTTTagatacaaaatttctattgaCTCTGCTAAAGGACTCTGCTACCTTCACCATGATTGTTCTCCTTTGATCCTACATAGAGACgtaaaatcaaacaacattttGTTGAGTTCAAATTTTGAAGCACATGTGGCTGATTTTGGTCTTGCAAAGTTCTTGGTTGACGGCGCTGCATCCGAGTGCATGTCATCAATTGCAGGCTCATATGGATACATTGCACCTGAATATGCTTATACATTGAGAGTGGATGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTCTACTAGAGCTTCTAACAGGAAAGAAACCAGTAGGTGATTTTGGAGAAGGTGTGGATCTTGTACAATGGTGCAAAAAAGCAACCAATGGAAGAAGAGAAGAGGTTGTGAACATAGTTGATTCAAGACTCATGGTAGTGCCAACAGAAGAAGCCATGCACATGTTCTTCATTGCAATGTTATGCTTAGAAGAAAACAGTGTACAAAGACCAACCATGAGAGAAGTTGTTCAGATGCTTTCTGAATTTCCTAGATCATCAATGTCATCATCTGATCaacaatcttcttcttcttcttcttctagtCATCCACCAAGCAAAAAGTTAATTCAGAATGATAAATTACCTTGTCCTCCTACTTTTAAACAAGACCTTttggtttaa 3030 0.3719 MLNKTYSNMIPFTLIVFTLFSSVFASSLLTDFHALVTLREGFQFPNPVINTWNTSNFTSVCSWVGIQCHEGRVVSVDLTDLNLFGSVSPSITSLDKLTHLSLSGNNFTGTIHITNLTSLQFLNISNNQFSGHMDWNYSTMENLQVVDVYNNNFTSLLPLGLVSLKKSLKYLDLGGNFFYGEIPKSYGKFVFLEYLSLAGNDISGKIPGELGNLSNLKEIYLGYYNSYEGGIPKEFGKLTNLVHMDLSSCDLDGSIPKELGNLKELNTLYLHINQLSGSIPKQLGNLTNLLYLDLSSNALTGEIPYEFINLNRLKLFNLFLNRLHGSIPDYIADFPDLDTLGLWMNNFTGEIPHKLGLNGKLQILDLSSNKLTGVIPSHLCSSNQLKILILLNNFLFGPIPEGLGTCYTLTRVRLGENYLNGSIPNGFLYLPKLNLAELKNNYLSGELSENGNSSSMPVCLEQLDLSNNALSGPLPHSLSNFTSLQILLLSGNQFSGPIPSSIGGLNQALKLDLSRNSLSGEIPPEIGFCVHLTYLDMSQNNLSGSITPLISNIRILNYLNLSRNHLNQTIPRSIGTMKSLTVADFSFNEFSGKLPESGQFAFFNASSFAGNPKLCGSLLNNPCKLARMKSTPGKSSADFKLIFALGLLMCSLVFAIAAIIKAKSFKKKGPGSWKMTAFQKLEFTVSDILECVKDGNVIGRGGAGIVYHGKMPNGMEIAVKKLLGFGANSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKGGFLSWNFRYKISIDSAKGLCYLHHDCSPLILHRDVKSNNILLSSNFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELLTGKKPVGDFGEGVDLVQWCKKATNGRREEVVNIVDSRLMVVPTEEAMHMFFIAMLCLEENSVQRPTMREVVQMLSEFPRSSMSSSDQQSSSSSSSSHPPSKKLIQNDKLPCPPTFKQDLLV 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04481 1009 ProSiteProfiles Leucine-rich repeat profile. 360 381 IPR001611 GO:0005515
Tsu08g04481 1009 Gene3D Phosphorylase Kinase; domain 1 657 768 - -
Tsu08g04481 1009 Gene3D Transferase(Phosphotransferase) domain 1 769 986 - -
Tsu08g04481 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Tsu08g04481 1009 MobiDBLite consensus disorder prediction 966 1009 - -
Tsu08g04481 1009 ProSiteProfiles Protein kinase domain profile. 692 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04481 1009 SMART serkin_6 692 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04481 1009 Pfam Leucine Rich repeat 529 544 IPR001611 GO:0005515
Tsu08g04481 1009 Pfam Leucine Rich repeat 286 302 IPR001611 GO:0005515
Tsu08g04481 1009 SUPERFAMILY L domain-like 359 616 - -
Tsu08g04481 1009 SUPERFAMILY RNI-like 75 396 - -
Tsu08g04481 1009 MobiDBLite consensus disorder prediction 966 990 - -
Tsu08g04481 1009 Pfam Leucine Rich Repeat 360 380 IPR001611 GO:0005515
Tsu08g04481 1009 Gene3D Ribonuclease Inhibitor 30 138 IPR032675 -
Tsu08g04481 1009 Pfam Protein tyrosine and serine/threonine kinase 695 962 IPR001245 GO:0004672|GO:0006468
Tsu08g04481 1009 SUPERFAMILY Protein kinase-like (PK-like) 683 962 IPR011009 -
Tsu08g04481 1009 SMART LRR_typ_2 481 505 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 286 310 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 94 123 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 238 262 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 553 577 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 359 382 IPR003591 -
Tsu08g04481 1009 SMART LRR_typ_2 140 163 IPR003591 -
Tsu08g04481 1009 Gene3D Ribonuclease Inhibitor 226 323 IPR032675 -
Tsu08g04481 1009 Gene3D Ribonuclease Inhibitor 139 225 IPR032675 -
Tsu08g04481 1009 PANTHER UNNAMED PRODUCT 14 971 - -
Tsu08g04481 1009 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 14 971 - -
Tsu08g04481 1009 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Tsu08g04481 1009 Gene3D Ribonuclease Inhibitor 324 630 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04481 Tsu-Chr8 62515092 62520273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04481 25 994 Receptor kinase-like Gene Family AT5G65700 56.085 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu08g04481 PK_Tyr_Ser-Thr 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04481 - - tcc:18607145 1493.4