Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04471 ATGTCTGTTGCAAGTAACATCAACGATGGATCTTCTTCATCAAGCATTGACAACAAAGAAACAATGCTGCCATATCAGATTCAAGGATTTCATTTGCTACAATTCATAGAGGATGAACGGATTGCACGAAGATATAAAGCAAAAGGGGGGATTTTTGACCCCCTTACTATTGGAGGAAGAGCTGTGATAATTTCTCTCTTTATGAAAGACTGTTATTCCACTGTGAGAGTGGAGAATATGAATAAGTCAAAAAAGTCTAAACCTCAACCAAAGAACACCTTTCTCTTAACATCAAATGTGGAGGGATGGAAAAGAGAGTTGAAGATTTATGAGGAAGAACAAAACTTAAAGGTCTTGTATGCTGAATCGGGTGGTGGAAAGATAAATTTCCATTCTCATGATATAGTGGTTTCAAGTATCTTGGACTTAAAGTTACCCATCAATAAGAATGATCGATTTTTAACATCGATCCAAGGCCACCAATGGCATAGGTTGATAATTGACAAGGTTGACATTGCAGATAATGATGCAATGAACTTTATTCTCAAGCTGAAAGTTGTCAATAAGTGGATATTAGGTGAAGAGGGTGAAGAGGGAATTCCACTCTCTCAAACCCAAACAGACTTTGTGTTTGGACTGTTGTTTGGTTCTGCCATGGAGGTTTCTCTGTCAAGGAAAAATgAGGTCTTAAAAGCTAATACATTAAAGAGAAATTACCTTTATGGTTTCGGTTCAAAAGTGATTCAAACCATTTCCATTGAACTCACAAATGAAGAAAAGGAGCCTTATATGGAGGCTGAAAATTGGGTGAAAGAACAGTTTAGGACCACCGCTGAACTTAAGAATGATGAACAACTTAGAAATCTTCAATATTTGGAGCTCTCTATCATAAAACTTAGAGAGATGGTTTCACACCTATCTCTAAGGGTGAGAAAAGAAGGCAATATAGAAGCGTGTGCAAAAGCTGCAAAAAAGTTACAAGACTTACAACCAAATGAGATATGTACCATTTGTCAATTTAACTGTAAGATCATAAAAATAGTCACCAAATGTGGCCATGTGTTCTGTGAAACCTGCTGGTCCAAGTGGTTccatgaagaaaaaaagtgtGGTGTGTGTAACAGCGAGGTGAATGATGATGATTTCTTTTCAACACCTTTCAATTGTCCAAGCTCCAAAGCAATTGAGTTGGTTAACCTTTTAAATACAGAGACATCgagaacatcatcatcaatagtCATCTCAAGTTTTGAGTCATTCTTACCTTGGCTAGAGATTTTTCTTAGAGAACACAGATTTAATGTGCACAGAGTTACTAATGATACAAGTGTTGAAGATAGACAAGTACTTCAACACCCAACAAAAGGCATGGTTCTATTAGCAAGCATTCAGTGGCTTATTTCACGTAATATAGACATATCTGCCCTTGATCAAGTTTATTTCATGGAGGCTATGAAAAAAAGAGTGGAAAACCGCATTATCAGTCAACTTGGAATCAATACAACAAGAATGTTCAAGGGGTTTAGATTGATTGTGAAGGATACTATTGAAACTAGAATTGTTGAATTAAATGGAACAAAACCACCTGAGTTCAAAGAATTTAATGTGGAGGAGGTAAATCGGATTCTAATGTga 1635 0.356 MSVASNINDGSSSSSIDNKETMLPYQIQGFHLLQFIEDERIARRYKAKGGIFDPLTIGGRAVIISLFMKDCYSTVRVENMNKSKKSKPQPKNTFLLTSNVEGWKRELKIYEEEQNLKVLYAESGGGKINFHSHDIVVSSILDLKLPINKNDRFLTSIQGHQWHRLIIDKVDIADNDAMNFILKLKVVNKWILGEEGEEGIPLSQTQTDFVFGLLFGSAMEVSLSRKNEVLKANTLKRNYLYGFGSKVIQTISIELTNEEKEPYMEAENWVKEQFRTTAELKNDEQLRNLQYLELSIIKLREMVSHLSLRVRKEGNIEACAKAAKKLQDLQPNEICTICQFNCKIIKIVTKCGHVFCETCWSKWFHEEKKCGVCNSEVNDDDFFSTPFNCPSSKAIELVNLLNTETSRTSSSIVISSFESFLPWLEIFLREHRFNVHRVTNDTSVEDRQVLQHPTKGMVLLASIQWLISRNIDISALDQVYFMEAMKKRVENRIISQLGINTTRMFKGFRLIVKDTIETRIVELNGTKPPEFKEFNVEEVNRILM 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04471 544 ProSiteProfiles Zinc finger RING-type profile. 335 374 IPR001841 -
Tsu08g04471 544 Gene3D - 388 533 IPR027417 -
Tsu08g04471 544 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 21 527 - -
Tsu08g04471 544 Pfam Zinc finger, C3HC4 type (RING finger) 333 378 - -
Tsu08g04471 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 240 525 IPR027417 -
Tsu08g04471 544 SUPERFAMILY RING/U-box 327 379 - -
Tsu08g04471 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 385 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04471 98 527 RAD5 or RAD16-like Gene Family AT5G05130 23.353 2.82e-19 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04471 - - egt:105976717 95.1301