Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04456 ATGTATGCTTTAAATTTGCAGGCTCGATATTTCTTCCAGCAGCTTATCTCAGGAGTTAGCTATTGTCACTCCATGCAAATCTGCCATCGAGACTTGAAGCTCGAGAACACCTTATTGGATGGCAGCCCTGCACCGCGGCtcaaaatttgtgattttggttATTCTAAGtcATCTCTGCTTCATTCTAGGCCTAAATCAACAGTGGGAACTCCAGCCTACATAGCACCAGAGGTTCTTTCACGTAGAGAATATGACGGCAAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGAGGATCCAAAAAATTTCAGGAAAACCATCAATCGAATTATGGCTGTTCAATACAAGATTCCAGATTATGTTCACATAACTCAAGACTGTAGACATTTGCTGTCTCGCATTTTTGTGGCAAATCCAGCCAAGAGAATCACCATTAAGGAAATCAAGTCTCATCCATGGTTTTTAAAGAACTTGCCTAGAGAATTGACTGAAATGGCTCAAGCAGTTTACTACAGAAAAGAAAATCCAACTTATTCTCTTCAGAGCATTGAAGACATTATGAATATTGTCGAGGAAGCTAAAGCCCAACCTCAGGCATCTAGGTCAATTGGAGGGTTTGGATGGGGAGGAGAAGAAGACTTTGATGAAACAAAAGAAGCAGAGGCTGAGGcggaagaagatgaatatgaaAAAAGAGTCAAGGAGGCACAGGAAAGTGGAGAAATTCATGTCAACTAA 780 0.3987 MYALNLQARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQEDPKNFRKTINRIMAVQYKIPDYVHITQDCRHLLSRIFVANPAKRITIKEIKSHPWFLKNLPRELTEMAQAVYYRKENPTYSLQSIEDIMNIVEEAKAQPQASRSIGGFGWGGEEDFDETKEAEAEAEEDEYEKRVKEAQESGEIHVN 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04456 259 SUPERFAMILY Protein kinase-like (PK-like) 7 202 IPR011009 -
Tsu08g04456 259 Coils Coil 233 253 - -
Tsu08g04456 259 MobiDBLite consensus disorder prediction 239 259 - -
Tsu08g04456 259 ProSitePatterns Serine/Threonine protein kinases active-site signature. 27 39 IPR008271 GO:0004672|GO:0006468
Tsu08g04456 259 MobiDBLite consensus disorder prediction 214 259 - -
Tsu08g04456 259 Gene3D Transferase(Phosphotransferase) domain 1 5 176 - -
Tsu08g04456 259 ProSiteProfiles Protein kinase domain profile. 1 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04456 259 PANTHER SERINE/THREONINE KINASE 7 253 - -
Tsu08g04456 259 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2A-RELATED 7 253 - -
Tsu08g04456 259 SMART serkin_6 4 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04456 259 Pfam Protein kinase domain 7 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04456 Tsu-Chr8 62364756 62367085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04456 8 172 CBL-interacting serine-threonine protein kinases AT5G10930 44.767 7.03e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Tsu08g04456 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04456 K14498 - gmx:100812259 455.292