Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04454 ATGCAACAACAACGTCAATCCAATTCAGCCCATGCCGTTCAAGCTCCTCAGCACAATTGGTTGCAGCATGCAAATTCTCACAAGAATTTCTCGTGCCAGGCCAAGTTTTTGAGCTCCAATTTCCTCTTTTCTGACCCATCTAAGAAACCAAGCGACACGCCTGGCAGTAGCAGGTTTGTAGTTCGACAAGCTCAAAATATTCAAAGAGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATTTGTTAAAGTTACTCCTCAGTTTCACGAAGACAGGACAACAACTTCCTTCCAAGGAAGCTATGAGAATGTCAATCTTAACCGGGCTGATGTCACCGCAACTCCAACCGTCATCAATCATACTTCTCGGGTTATAGATAGTTCAGTGAACTATCACACAAAGTACGCAAGCCCACCCAACGAGTCTACAAAACGTGTAGCTGATAATATTATTAATGTCGATGACGACGACATACTCGAGAACATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCACTTGCACTCCTCAACCTCCGGTGTCCAAATTTCCTCCTGTTACACCATTTGCAGATAAGGTTAATTTTGCCGGGCAGGGGGATACTTTTTTGCCACCAGAGCTGTGCTTGGATTGCATCCACGGCTACAAGTTAGGGCTATGCCCTGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCTATCTCTAATGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCGAAGACAGGTCACAGCTGAATAAGCAAATTCAACAActtgaaaaatatattcattccaGTAATCGTGACGAAGAGAGGCAAAAGTCACATTTTGCTACATCTATGGCACCACCTACATCTTTTGTTTATGAAACACCCCAACGAAATGTCATCAGTAGTGGACCAAATAGATATGACGGACAGGCTTATATGGGTAATGGTACATATGAGCCATCATACCAGTCTTCGTATGTCATGCCATCAGGTCCAGTGGAGAGGGAACCATTCATCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCTGGAGATAAACGGTGGAGCAGCCGGGACTTTTCTTGGACTAAAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAACCACTCATTTCGCCCCAACCAAAGAGAGGTAATTAATGCCACAATGAGTGGAtgtgatgtttttgttttgatgccCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTCATTAATCCTGGTATAACATTAGTGATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATATGGAATGGGCTGAACAGCAGGATATCCTTAGAGAACTCAATTCTGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAAAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGCGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCCTCCTGTGTATTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCAATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTGGATTGTCGGCGCTATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTCGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCACGGTGCTGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGATTTTCTTGCGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGGCGAAGGTCCGTAATGTGTTATTTGGTATCCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCTGGGAAATCTGATATAACTCCAGCCAAAGGTTCTCTGACTTCTGGGAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTCAAACTGAAGTAGACGTGAACCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACAATTGAGAAAACCATAAACGAATTTTACAATACGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGCTGATTCAGCCAAAAGAAGACGAGAGGCAAATAGAGATCCAGATTCAAATGcggaggatgatgatgattcctTAATCAAAAGTACCGGTCGTTCCAAGAAAAGGACAGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGATTGTATTAATATTGAAGATGAGGCAttagataaaataaatggtaCAGATGCTGCAGGAAGAGTACTACCTCGATGGACAGCATCTTGA 3465 0.4063 MQQQRQSNSAHAVQAPQHNWLQHANSHKNFSCQAKFLSSNFLFSDPSKKPSDTPGSSRFVVRQAQNIQRAQVEKAWLALSSLKISSRNYVQPGKFVKVTPQFHEDRTTTSFQGSYENVNLNRADVTATPTVINHTSRVIDSSVNYHTKYASPPNESTKRVADNIINVDDDDILENIDVDQIVEKYQSTCTPQPPVSKFPPVTPFADKVNFAGQGDTFLPPELCLDCIHGYKLGLCPEAASHLQEFKDNLIAISNELIDNVENLSSVQIAKLREDRSQLNKQIQQLEKYIHSSNRDEERQKSHFATSMAPPTSFVYETPQRNVISSGPNRYDGQAYMGNGTYEPSYQSSYVMPSGPVEREPFIPKIIEVNYIEGSGDKRWSSRDFSWTKELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWAEQQDILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLRMVSYCENDVDCRRYIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNEAKVRNVLFGIQRIILRFPSSVKASKPGKSDITPAKGSLTSGKLNLPIDIPDQPQTEVDVNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEFYNTDKNSSGSKGSADSAKRRREANRDPDSNAEDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEEDYYHGCLDEDLDCINIEDEALDKINGTDAAGRVLPRWTAS 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04454 1154 ProSiteProfiles Rhodanese domain profile. 626 668 IPR001763 -
Tsu08g04454 1154 SUPERFAMILY HRDC-like 974 1046 IPR010997 GO:0000166|GO:0044237
Tsu08g04454 1154 Pfam RQC domain 816 932 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tsu08g04454 1154 Pfam DEAD/DEAH box helicase 405 573 IPR011545 GO:0003676|GO:0005524
Tsu08g04454 1154 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 611 756 IPR001650 -
Tsu08g04454 1154 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 395 870 IPR004589 GO:0004386|GO:0006310
Tsu08g04454 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 860 IPR027417 -
Tsu08g04454 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 735 IPR027417 -
Tsu08g04454 1154 PANTHER DNA HELICASE RECQ FAMILY MEMBER 102 1122 - -
Tsu08g04454 1154 CDD DEXHc_RecQ 394 593 - -
Tsu08g04454 1154 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 102 1122 - -
Tsu08g04454 1154 Gene3D - 817 927 IPR036388 -
Tsu08g04454 1154 ProSiteProfiles HRDC domain profile. 970 1052 IPR002121 GO:0003676
Tsu08g04454 1154 SMART ultradead3 399 602 IPR014001 -
Tsu08g04454 1154 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 411 586 IPR014001 -
Tsu08g04454 1154 Pfam Helicase conserved C-terminal domain 610 716 IPR001650 -
Tsu08g04454 1154 Pfam RecQ zinc-binding 728 809 IPR032284 -
Tsu08g04454 1154 Gene3D - 367 593 IPR027417 -
Tsu08g04454 1154 SMART RQC_2 819 930 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tsu08g04454 1154 MobiDBLite consensus disorder prediction 1051 1102 - -
Tsu08g04454 1154 Gene3D HRDC domain 969 1058 IPR044876 -
Tsu08g04454 1154 MobiDBLite consensus disorder prediction 1063 1092 - -
Tsu08g04454 1154 SMART helicmild6 636 717 IPR001650 -
Tsu08g04454 1154 CDD SF2_C_RecQ 594 726 - -
Tsu08g04454 1154 Pfam HRDC domain 975 1042 IPR002121 GO:0003676
Tsu08g04454 1154 Gene3D - 594 813 IPR027417 -
Tsu08g04454 1154 SMART hrdc7 970 1052 IPR002121 GO:0003676
Tsu08g04454 1154 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 525 534 IPR002464 -
Tsu08g04454 1154 Coils Coil 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04454 Tsu-Chr8 62351055 62358700 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04454 626 730 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 2.34e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04454 K10901 - gmx:100800006 1754.18