Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04452 ATGACAATAGTTACAACACCTAGTGTTGGTATGAAATTTGATAATGTAAATGAAGCATGGAAATTTTGGGCTGCCTATGGTAAAGAAAAAGGCTTTGGAGTTAGAAAACAATATTCCAACAAAAAGAAGGACGGCTCTATTAGATCGTGCAGATTCGTTTGTTGTAAAGAGGGTCATCGAACAAAGAATCTGAAATCCCTTTTGGCGAAGAATCCTAAAGATGAGACAAGAACCGATTGCGAAGCGAGAATTGCACTTAGTAGAAAGGATGAAAAGTTTCTCATGAGTGCACATGTTGGAGGTAGAGCTAATCTTGGATATACTCGGTTGGATGCGAAGAATTATCTAAAAGAAAGACGAAAACGTAGGATGTTATTTGGAGAAGTTGGTAGTCTCATGCAATATTTTCAAAAGCAACTTTTGGAAAATCCATCATTTTACCATGCATATCAAATGGATTGTGAAGAACAAATTACAAATGTCTTTTGGACAGATGCAAGAATGATTTTGGACTATGGATATTTTGGTGATGTGGTTTCTTTGGATACATGGTGCTAA 558 0.362 MTIVTTPSVGMKFDNVNEAWKFWAAYGKEKGFGVRKQYSNKKKDGSIRSCRFVCCKEGHRTKNLKSLLAKNPKDETRTDCEARIALSRKDEKFLMSAHVGGRANLGYTRLDAKNYLKERRKRRMLFGEVGSLMQYFQKQLLENPSFYHAYQMDCEEQITNVFWTDARMILDYGYFGDVVSLDTWC 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04452 185 PANTHER OS01G0852650 PROTEIN 6 183 - -
Tsu08g04452 185 Pfam FAR1 DNA-binding domain 21 91 IPR004330 -
Tsu08g04452 185 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 183 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04452 Tsu-Chr8 62341421 62342294 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g04452 FAR1 4.9e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04452 - - cam:101507947 226.483