Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04441 ATGGAGAATAATTTCAGTTCATATAATCCTCTTCATGATTTAGCCTCTAGCTTGAAGAGAAAGCACCATGATCATCATGCAGAGCATCTTCATGAAGTTAAAGAAGATTAtacatcttcttcatctttcaATCTAAGGAATGTTTCAAAGCTCATTCTTCCTCCACTTGGTGTTTCAAAGCAAAATCCAGTTTGCTCAAAAGGATGGATCATTTCCCCAATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTTGTTTTGGTAGCTTATTCTGCATGGGTTTATCCCTTTGAAGTTGCTTTCATGCATTCTTCTCCAAATAGCAAACTCTATAAGGTGGACAATATTGTTGATCTTTTCTTTGCTGTTGATATTGTTTTGACATTCTTCGTCGCATACATAGATGGAACAACTCATCTACTTGTACGAGATTCCAAAAAAATTGCTGTCAgGTACTTGTCAACATGGTTCCTAATGGATGTGGCATCAACTATACCATATGAACCAATAGGCTTTTTTTTAACTGGAAAACACAAATTGGGTCTACCTTACTTCCTCTTGGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAGCAATTCTTCACAAGGCTTGAGAAAGACATCAGGTTCAACTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTTTTTTCGGTTCATTGTGCCGGGTGCTTGTATTACATGCTAGCTGATATGTACCCTCATGAAGGAAAGACATGGATTGGAGCTGTGATTCCAAACTTTAGAGAGACAAGCCCTCGAACAAGATATATTTCAGCCATTTACTGGTCCATCACCACGATGACAACTGTTGGTTATGGCGACCTTCATGCTGTCAACACCATGGAAatgattttcattattttctacATGCTCTTCAACCTTGGTCTAACTGCTTACTTGATTGGTAACATGACAAATCTTGTTGTTGAAGGAACTCGCCGCACCATGGAATTTAGAAATAGCATTGAAGCAGCATCAAACTTTGTGTGCCGAAACCGGTTGCCTCCAAGGTTAAAAGAACAGATCCTAGCTTACATGTGTTTAAGATTTAAGGCAGAGAGCTTGAATCAACATGAACTAATTGAACAGCTACCAAAGTCAATTTGCAAAAGCATCTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCCAAGGCGTCTCAAAAGAAATCCTTTTGTCCCTAGTTGCAAAAATGAAGGCAGAATACATACCACCTAGAGAGGATGTTATAATGCAAAATGAATCACCAGATGATGTTTATATTATAGTGTCAGGAGAAGTAGAGATCATTGATAGTGTaatagagaaagagagaacTTTAGGGACTCTAACAACAGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGCCTCAGAGTTTTACCTACAGAACCAAGACTCTCACACAGCTTCTGAGGGTGAAAACCAATACTCTTATAGAAGCAATGCAGATTAAAAAAGAAGACAATATACTAATACTCAAAAATTTCCTTCAGGTTCGTTACTGTCTTGTCTTATGA 1572 0.3728 MENNFSSYNPLHDLASSLKRKHHDHHAEHLHEVKEDYTSSSSFNLRNVSKLILPPLGVSKQNPVCSKGWIISPMDSRYRCWESFMVVLVAYSAWVYPFEVAFMHSSPNSKLYKVDNIVDLFFAVDIVLTFFVAYIDGTTHLLVRDSKKIAVRYLSTWFLMDVASTIPYEPIGFFLTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFNYFWVRCARLLSVTLFSVHCAGCLYYMLADMYPHEGKTWIGAVIPNFRETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAESLNQHELIEQLPKSICKSICQHLFFPTVEKVYLFQGVSKEILLSLVAKMKAEYIPPREDVIMQNESPDDVYIIVSGEVEIIDSVIEKERTLGTLTTGDMFGEVGALCCRPQSFTYRTKTLTQLLRVKTNTLIEAMQIKKEDNILILKNFLQVRYCLVL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04441 523 PANTHER POTASSIUM CHANNEL AKT2/3 47 517 - -
Tsu08g04441 523 Gene3D - 79 321 - -
Tsu08g04441 523 PANTHER POTASSIUM CHANNEL AKT1 47 517 IPR045319 GO:0005249|GO:0006813
Tsu08g04441 523 Pfam Cyclic nucleotide-binding domain 418 501 IPR000595 -
Tsu08g04441 523 CDD CAP_ED 398 501 IPR000595 -
Tsu08g04441 523 SMART cnmp_10 398 515 IPR000595 -
Tsu08g04441 523 ProSiteProfiles cAMP/cGMP binding motif profile. 398 517 IPR000595 -
Tsu08g04441 523 SUPERFAMILY cAMP-binding domain-like 325 516 IPR018490 -
Tsu08g04441 523 SUPERFAMILY Voltage-gated potassium channels 73 321 - -
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 312 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 115 125 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 268 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 294 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 126 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 PRINTS EAG/ELK/ERG potassium channel family signature 91 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu08g04441 523 Pfam Ion transport protein 79 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g04441 523 Gene3D Jelly Rolls 365 521 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04441 Tsu-Chr8 62266394 62274241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04441 13 516 Ion Channels AT4G22200 74.951 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04441 K21867 - gmx:100798422 885.174