Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04438 ATGGGGACCAAAGCAAAGAAAGCTACTGTGAAGaagagtttgaaaaaggttAATGCTATTAAACCATCTGAAGCTGCTGATTTTTTGCCGTTGGAAGGCGGTCCTGGTCGCAAACTTCCGAATATTAAACCGCTGGAAAATGCTTCCCCTGTTTTGTATATTGGTAGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGCTTATTTCGCACAATTTGGTACCATCAAGAGATTGAGAATTGCCAGAAATAAAAAGACtggaaaatcaaaacattttGGGTTCATTGAATTTGAATCTCCTGAGGTAGCGAAAATTGTGGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTTCGTGGTACCTTTAGAACATGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAACCCGTGGATTCTCTCCAAATTGAACGAGAGCGACATGACAAGGAAAGAACATTGGCAGAACACAGAAAGTTGATTGATAGGGTTATGAAACGTGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGAATATGAATGTCCTGAGATTGTCGGTAACCTCCAGTCTGCTCcaaagaaaataaagtttgaaGACTGA 633 0.3776 MGTKAKKATVKKSLKKVNAIKPSEAADFLPLEGGPGRKLPNIKPLENASPVLYIGRIPHGFYEKEMEAYFAQFGTIKRLRIARNKKTGKSKHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPLEHVHPRLWKGFNYRYKPVDSLQIERERHDKERTLAEHRKLIDRVMKRDQKRRKRIEAAGIEYECPEIVGNLQSAPKKIKFED 210
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04438 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 119 IPR000504 GO:0003723
Tsu08g04438 210 SMART rrm1_1 51 124 IPR000504 GO:0003723
Tsu08g04438 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 123 IPR000504 GO:0003723
Tsu08g04438 210 PANTHER - 1 209 - -
Tsu08g04438 210 SUPERFAMILY RNA-binding domain, RBD 51 198 IPR035979 GO:0003676
Tsu08g04438 210 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 209 - -
Tsu08g04438 210 CDD RRM_NIFK_like 51 123 - -
Tsu08g04438 210 Gene3D - 4 124 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu08g04438 Tsu-Chr8 62239236 62241631 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04438 52 116 Eukaryotic Initiation Factors Gene Family AT2G36660 33.846 4.87e-06 44.7
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04438 K14838 - gmx:100814276 335.88