Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu08g04438 | ATGGGGACCAAAGCAAAGAAAGCTACTGTGAAGaagagtttgaaaaaggttAATGCTATTAAACCATCTGAAGCTGCTGATTTTTTGCCGTTGGAAGGCGGTCCTGGTCGCAAACTTCCGAATATTAAACCGCTGGAAAATGCTTCCCCTGTTTTGTATATTGGTAGGATTCCACATGGATTCTATGAGAAGGAGATGGAAGCTTATTTCGCACAATTTGGTACCATCAAGAGATTGAGAATTGCCAGAAATAAAAAGACtggaaaatcaaaacattttGGGTTCATTGAATTTGAATCTCCTGAGGTAGCGAAAATTGTGGCTGATACTATGCACAATTATTTGCTTTTCGAACACCTTCTTCAGGTTTTCGTGGTACCTTTAGAACATGTTCATCCCAGATTATGGAAAGGATTCAATTACCGTTACAAACCCGTGGATTCTCTCCAAATTGAACGAGAGCGACATGACAAGGAAAGAACATTGGCAGAACACAGAAAGTTGATTGATAGGGTTATGAAACGTGACCAAAAACGACGTAAAAGGATAGAGGCTGCTGGCATTGAATATGAATGTCCTGAGATTGTCGGTAACCTCCAGTCTGCTCcaaagaaaataaagtttgaaGACTGA | 633 | 0.3776 | MGTKAKKATVKKSLKKVNAIKPSEAADFLPLEGGPGRKLPNIKPLENASPVLYIGRIPHGFYEKEMEAYFAQFGTIKRLRIARNKKTGKSKHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVFVVPLEHVHPRLWKGFNYRYKPVDSLQIERERHDKERTLAEHRKLIDRVMKRDQKRRKRIEAAGIEYECPEIVGNLQSAPKKIKFED | 210 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu08g04438 | 210 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 52 | 119 | IPR000504 | GO:0003723 | |
Tsu08g04438 | 210 | SMART | rrm1_1 | 51 | 124 | IPR000504 | GO:0003723 | |
Tsu08g04438 | 210 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 50 | 123 | IPR000504 | GO:0003723 | |
Tsu08g04438 | 210 | PANTHER | - | 1 | 209 | - | - | |
Tsu08g04438 | 210 | SUPERFAMILY | RNA-binding domain, RBD | 51 | 198 | IPR035979 | GO:0003676 | |
Tsu08g04438 | 210 | PANTHER | MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN | 1 | 209 | - | - | |
Tsu08g04438 | 210 | CDD | RRM_NIFK_like | 51 | 123 | - | - | |
Tsu08g04438 | 210 | Gene3D | - | 4 | 124 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu08g04438 | Tsu-Chr8 | 62239236 | 62241631 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu08g04438 | 52 | 116 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 33.846 | 4.87e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu08g04438 | K14838 | - | gmx:100814276 | 335.88 |