Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04427 ATGAGATATTCAGATCCCCTTCGTTCAACACAAACGAATCGCACCAAATCTAACAACCATGGCGGAATAGGATCTAACACCACGAATCGCACCAAATCTCGACCTACATTTGTCTTCCCCCTCCTGgaatttcttcaagaaagagAATTATACATCAATAACCATAACTTAAAAGCTAAGATCGATCTCTTAAACAACACAAACATGGTTGATTACGCTATGGATATTCGCAAGACACTCTATCAAACTGAAGATGTGCTTCATGATATGGTTGAACGAAGAACTGATGTTGTTGCTCGTTTTAAGTCTCTTGGAGATGTTGCTGCTCCTCTTGTTGCGTTTCTTCATAATCCTTCTGCTGTCCAGGAATTGAGAGCTGATAAACTTAATAATATTCAGATGCTTAATGATAAATACCAGCCTTTCTATTTGCTTCGTTCAATTGTGTTGGTCTTAGATTTATTTGTATGGCAAAGCAACATGCAGGCTTAA 492 0.3699 MRYSDPLRSTQTNRTKSNNHGGIGSNTTNRTKSRPTFVFPLLEFLQERELYINNHNLKAKIDLLNNTNMVDYAMDIRKTLYQTEDVLHDMVERRTDVVARFKSLGDVAAPLVAFLHNPSAVQELRADKLNNIQMLNDKYQPFYLLRSIVLVLDLFVWQSNMQA 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04427 163 SMART eIF3_N_2 37 143 IPR019010 -
Tsu08g04427 163 MobiDBLite consensus disorder prediction 1 31 - -
Tsu08g04427 163 Pfam eIF3 subunit 6 N terminal domain 37 140 IPR019010 -
Tsu08g04427 163 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 36 140 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04427 Tsu-Chr8 62134123 62136552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04427 37 140 Eukaryotic Initiation Factors Gene Family AT3G57290 68.269 7.32e-43 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04427 K03250 - gmx:100797748 159.844