Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04426 ATGGAGAAGATTGTTTTTTTGATGTTTCTGTTTCTTAGCATAAACATGATGATGGGTATTTCAGCAGCTCCATCAACATGTCCTATGGACCTTAACTATGTTCTCAGAATCCATTGGAATTCTTCTGCTTGTCAAGATTTTGActcaaaaaaagaagtaaactCATCAAGCACATGTTGTATATCACTTTTGTCACTTTTTGGAATAGGATTTGCACAACATCTTAAAGAAACTTCTCAATTCAATCTTCAAGACCTTCAAACTTCAATTTCATGCATGCATGATTTTCAACAAAAGCTTAATTCTTTATCACTTTCAAACAACCTTGTCAACTCTTGTTTTGACCCTCAACAGTTTGTTATCTCTCGTAACTTTTGTGCAGGTATTGAAACTGTTCATGATTGGAATGAAAAGTTGGGTCAGAATACAAATTTGAACACTGCTTGTAAACCAGATCTAACTGATCTTTCTCAGTGTGATGTGTGTCTAGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCAATTGATGGTAATTCTACAAATTCATTGAATTGTTTCTTACTTACAATTCTTTATGCTGGTGGGATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGTTTTTAGTGTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGATTAACAGGAGCTGGTGTTGCATTGTTTGTTATGTGTTCTTTGTTAGGTTTATATGTTTGGTTTGATAGAAAACGTATGAGGAAGAGAAAGCTTGAAacttttcaatttgattttgatcctGAGGAACAAGGTTCTAGGCGTAGATTAAGGCCTAATACAGGTTCAATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAAAATTTCATAGGGAGAGGtgggtttggtttggtttttaaaGGAACTTTGGCTGATGGATCTGTTGTCGCTGTTAAGAGAGTTTTAGAATCTGATTTTCAAGGGGATGCTGAGTTTTGTAATGAAGTTGAGATTATTAGTAATCTTAAGCATAGGAATCTGTTGCCTCTTAGAGGCTGTTGTGTGGTTGATGATAATGAGAATTATGGTGATAAGGGAAGTCAAAGATATCTTGTTTATGATTATATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTCAAAAAGCAAACAAATCATTGACTTGGCCTCTTAGGAAAAACATTATCTTGGATGTGGCAAAGGGTTTGGCTTATTTGCACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCAACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGACTTGCTAAACAAAGTCGGGAGGGTCAGTCTCATCTCACTACTAGAGTTGCCGGAACTCATGGATATTTAGCGCCGGAATATGCGCTATATGGTCAACTGACTGAGAAGAGTGATGTGTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGATTTGTCTTCATCGGGATCGCCGCGAGCATTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAGTCGGGGAAAATAGATGAGGCTTTGGATGCTTCTCTTTTGAAAGACGATAACAATGCTAGTGCAAATCCTAAGAGCATAATGGAAAGGTATTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTAAGGCCAACAATTTCTGATGCTTTGAAGATGATGGAAGGTGATATTGAGGTTCCTCAAATTCCAGATAGGCCAATGCCTCTTGGACATCCTTCGTTTTATAATAATGATAGCAACGGCAACACGTTTAGCATATCCCCGGCATTAAGCGGCCTCAAATTGCCTGCTGGAGACATGCTcagGTCCATTAGTGAGAGATGA 1950 0.3692 MEKIVFLMFLFLSINMMMGISAAPSTCPMDLNYVLRIHWNSSACQDFDSKKEVNSSSTCCISLLSLFGIGFAQHLKETSQFNLQDLQTSISCMHDFQQKLNSLSLSNNLVNSCFDPQQFVISRNFCAGIETVHDWNEKLGQNTNLNTACKPDLTDLSQCDVCLAAGLQVKQKLVSIDGNSTNSLNCFLLTILYAGGIVNEFGPESNGAVTCVFSVPVYSQVGSGSKGHQGLVFGLTGAGVALFVMCSLLGLYVWFDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDDNENYGDKGSQRYLVYDYMPNGNLEDHLFVSKDPQKANKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDEALDASLLKDDNNASANPKSIMERYLLVGILCSHVMVALRPTISDALKMMEGDIEVPQIPDRPMPLGHPSFYNNDSNGNTFSISPALSGLKLPAGDMLRSISER 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04426 649 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 13 643 - -
Tsu08g04426 649 SUPERFAMILY Protein kinase-like (PK-like) 285 595 IPR011009 -
Tsu08g04426 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Tsu08g04426 649 Pfam SPARK 22 187 IPR043891 -
Tsu08g04426 649 CDD STKc_IRAK 310 597 - -
Tsu08g04426 649 Pfam Protein kinase domain 306 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04426 649 ProSiteProfiles Protein kinase domain profile. 304 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04426 649 Gene3D Transferase(Phosphotransferase) domain 1 389 603 - -
Tsu08g04426 649 SMART serkin_6 304 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04426 649 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Tsu08g04426 649 Gene3D Phosphorylase Kinase; domain 1 275 388 - -
Tsu08g04426 649 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04426 Tsu-Chr8 62122998 62126050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04426 20 644 Receptor kinase-like Gene Family AT1G11050 63.477 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Tsu08g04426 Pkinase 4.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04426 - - gmx:100806560 1030.39