Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04423 ATGTCTGAAGAAGTTGGATCCATGTTGGCAGTTTATGATGATCCATCTGACCAACATTCACTATCCTTCGGCGATACGAGCAGCACCGAGGAATCCCCTGGTGAAACCAGACTCTCCTTGCAACCAACTAATGATCACATTCCATATATTGGTCAAAGATTTTCCACTCATGACGAAGCTTATGAATTCTATAGTGATTTTGCTAAGAGTTGCGGCTTCTCAATTAGACGTCACCGTACAGAAGGAAAAGATGGTGTTGGGAAAGGACTTACTAGACGCTACTTTGTTTGTCATCGTGCTGGCAACACTCCTGTTAAATCAACAACTGAAACTAAACCtcaaagaaatagaaaatcTTCTCGATGTGGTTGTCAGGCTTATATGCGGATAAGCAAAACAACAGAATTTGGACCTCCAGAATGGCGTGTCACTGGTTTTGCTAACCATCATAATCATGAACTTTTGGAACCAAATCAAGTTCGGTTCCTTCCTGCATATAGAACTATATCAGATGTTGACAAAAATCGAATCCTTATGTTTGCCAAAACAGGGATTTCTGTTCATCAAATGATGAGGCTTATGGAGCTTGAGAAGTGCGTGGAACCAGGGTATTTGCCTTTTACTGAAAAGGATGTAAGGAATTTACTCCAGTCGTTTAGAAAATTAGATCCAGAAGAAGAAAGCCTAGATCTGTTAAGAATGTGCAGAAATATTAAGGAGAGAGAtcctaattttaaatttgagtaCACACTTGATGCAAACAACCGTTTAGAAAATATTGCTTGGTCATATGCCTCGTCAATCCAATTGTATGATATCTTTGGTGATGCTGTGGTATTTGATACAACACATCGTCTGACTGCATTTGACATGCCATTGGGGATATGGGTTGGAATAAATAATTATGGAATGCCCTGCTTCTTTGGCTGTGTGCTACTGCGAGATGAAACTGTCAGGTCATATTCCTGGGCAATAAAGGCTTTCTTAGGTTTTATGAATGGGAAGGCTCCACAGACTATATTAACCGACCAAAACATTTGTCTCAAAGAAGCACTATCTGCAGAAATGTCGATAACAAAACATGCTTTCTGCATATGGATGATAGTAGCAAAGTTTCCATCTTGGTTCAATGCTGTTCTAGGGGAACGCTACAATGAGTGGAAGGCTGAATTTTATAGACTATATAATCTTGAATCAGTTGAGGATTTTGAACTAGGGTGGAGGGAAATGGTATGTTCTTTTGGACTGCATTCCAATCGGCACATTGTTAATTTATATAGCACGCGCTCACTTTGGGCATTGCCATATTTAAGAAGCCATTTTCTTGCGGGAATGACTACAACTGGCCAGTCAAAGTCAATTAATGCCTTCATTCAACGGTTTCTAAGTGCACAAACACGACTGGCTCACTTTGTTGAACAGGTAGCTGTTGCTGTGGATTTTAAAGATCAAACTGGAGAACAACAAACCATGCAGCAGAATCTCCAAAATGTCTGCCTCAAAACAGGAGCCCCCATGGAATCACATGCTGCTACGGTCCTCACTCCTTTTGCCTTTTCCAAGCTTCAAGAACAACTTGTGTTGGCTGCACATTATGCATCTTTTTCAGTTGAAGATGGTTTTCTTGTGAGACATCACACAAAAGTTGAAGGAGGTCGCAAAGTTTATTGGTCCCCTCATGAAGGAATTATAAGCTGCAGCTGTCACCAGTTTGAATTTTCTGGAATTTTGTGTAGGCACTCTCTCAGAGTTCTTTCAACAGGAAATTGTTTTCAGATCCCAGATACATATCTTCCCATTCGATGGCGTCGTATCAGCGTGCCTTCTTCTAAGCTTCTTCAAAATACACCCAACGATCATGCCGAAAGAGGTTCTCACTCATCTCTCCCAATTTCGACGCCATCATCAACTCGTCTTTCTCTCTCGCTGgatAAAATAATGGAAGAAGGAAAACATAAATCGAGGAAAGAAGACGGTGATTCTAAGAGGAGTCATCGAGATCGTGATAGAACTGGTGAAAGAGGTAAGGATAGAAGCGATGGAAGGCACAAAGATAATAGGGAGAAGAGGGATCGTGAGTCTCGAAGACATGACAGAGAGAAAAGTACTGATTCTGAGGATAAGCATGATAGAGACAGGGAGAAGCGCAGAGATGTTAAAGAGAAGGATAGGGCACGGGTTCATGATGTTGACCGAGAAAAGAGAGACAGGAAAAGGGAAAGAgatagagaagagaaagaaaaagagagactaagagagaaagaagagaaggaAAGGGAGAAATTaagggagaaagaaagagatAGGGAAGATAAGGAAAAAGAGAgaatgagggagaaagaaagagatAGGGAAGATAAGGAAAAAGAGAgaatgagggagaaagaaagagagagggAAAGAAAGGAGGAGAAGGAGAGGAttagagagaaagaaagggcAAGGGAAAGGAGGGATCAtgagagagagaaggaaaaagaaaaggaaagagaTAAAGGAAGGAGAGGACGGGAGCGGGAACGTGAGTGGGAGAAATATAGAGACGTTGATAGCGAAAACAGTGATGGTGAATTGAGGGAGAGAAATAGAAAGCGACATAAGAAAGACGACGACAAATATAAGGGGCGGGAGAAGGAAAAGAGTTCTAGCAAGTCAAACAGGAAAGTTGATGGAATTAACGGAAGCCCTAGGAGAAAGAGCGATGGAGATGACTCTGATTccaaagagaaagaaaaaagactTACCCGTGAGGAGGAAATGGAAGTTGAACAAAAGAGGCTGGATGATGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAAGAGGAAGCAGGAAGAGGTAGAAAGAGAAAAGCAAGGTGAAGCAAGTATTGCTGAACTAGAGTCTGGAAAGGCATGGACACTTGATGGGGAGGAATCTGATGACGACGATGGAACAGGTAGACATACGAGTATGGATGTAGACGAAGACGACAAACTTGCTGATAATGTACCTAGGGAGTCAATGGAGGTAGATGTTGACAATGGAACAGTTTCAACCGATTTACAAAATGGAGATGCTGGTGCTCCTGCAGACGATGAGATTGACCCATTGGATGCTTTCATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGTTGAACAATGCTGTTAACTCAACACCTTCTGATAAAGATTCTGACTTGAAACCCAAGGATATAGAGGACGAGCGTAGTAATGGTCGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCCGGTGAAGAGTCCGACTCAGATTATGCAGAttctgatgttgagggggaTCCATTAGATGAAGATGACGACGATTTTATGAAGAGAGTGAAGAAAACAAAAGTTGAAAAGCTCTCTTTAGTTGATCACTCAAAGATCGACTATATACCATTCAAAAAGAATTTCTATATTGAAGTGAAAGAGATCTCAAAGATGACTCTTGAAGAAGTTGTATTATACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAGACTGGACTTACTAGCAAAGTTTTAGACACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGCGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGGGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCATAGTGACATAAAGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTTCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTAGTTTGTACTCCAGGTAGGATGATTGACATACTTTGCACCAGTAGTGGAAAAATAACTAACCTGCGTAGAGTAACTTATCTGGTCATGGATGAGGCAGATCGGATGTTTGATATGGGCTTTGAACCACAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACTGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCAGAAAATGAGAGGTTCCTTAGACTCTTGGAACTACTTGGAGAATGGTATGAAAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATGCCTTGTTCAAGGATCTAATGAAACATGGCTATCCATGTCTTTCTCTTCATGGGGCTAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGTTGGTGGCAACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGGGTTGGGCGCACTGGCCGCGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAAGATGATGCAAGATATGCACCAGATCTGGTGAAAGCTTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAATCCCTTGCCGATGGCTTTATGGCAAAAGTTACTCAAGGATTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAGGCTGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGACGGTATTAGGAAAGCAGGAGGTGATATTTCACAGCACCCTGCTCTTGCTCAGATTCTTGCTGCGACCAAAGCAAATCCTTCAATGCCTACTCCTATCTCTGCACCCCAACTGATTTCAAATGGTGGGCTGCCTATTTCTTTGCCATCTGTTGTTGGTCTCCAGGCTCCAACAGTCTTGCCTGGGACAGGGCTACCCCTTGCTACAAATGACGGGGCAGCTCGAGCTGCATTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTTCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCTGAGTGGACTGGAGCTGCTATTACCACAAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAGAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAACCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 5463 0.4058 MSEEVGSMLAVYDDPSDQHSLSFGDTSSTEESPGETRLSLQPTNDHIPYIGQRFSTHDEAYEFYSDFAKSCGFSIRRHRTEGKDGVGKGLTRRYFVCHRAGNTPVKSTTETKPQRNRKSSRCGCQAYMRISKTTEFGPPEWRVTGFANHHNHELLEPNQVRFLPAYRTISDVDKNRILMFAKTGISVHQMMRLMELEKCVEPGYLPFTEKDVRNLLQSFRKLDPEEESLDLLRMCRNIKERDPNFKFEYTLDANNRLENIAWSYASSIQLYDIFGDAVVFDTTHRLTAFDMPLGIWVGINNYGMPCFFGCVLLRDETVRSYSWAIKAFLGFMNGKAPQTILTDQNICLKEALSAEMSITKHAFCIWMIVAKFPSWFNAVLGERYNEWKAEFYRLYNLESVEDFELGWREMVCSFGLHSNRHIVNLYSTRSLWALPYLRSHFLAGMTTTGQSKSINAFIQRFLSAQTRLAHFVEQVAVAVDFKDQTGEQQTMQQNLQNVCLKTGAPMESHAATVLTPFAFSKLQEQLVLAAHYASFSVEDGFLVRHHTKVEGGRKVYWSPHEGIISCSCHQFEFSGILCRHSLRVLSTGNCFQIPDTYLPIRWRRISVPSSKLLQNTPNDHAERGSHSSLPISTPSSTRLSLSLDKIMEEGKHKSRKEDGDSKRSHRDRDRTGERGKDRSDGRHKDNREKRDRESRRHDREKSTDSEDKHDRDREKRRDVKEKDRARVHDVDREKRDRKRERDREEKEKERLREKEEKEREKLREKERDREDKEKERMREKERDREDKEKERMREKERERERKEEKERIREKERARERRDHEREKEKEKERDKGRRGREREREWEKYRDVDSENSDGELRERNRKRHKKDDDKYKGREKEKSSSKSNRKVDGINGSPRRKSDGDDSDSKEKEKRLTREEEMEVEQKRLDDEMEKRRRRVQEWQELKRKQEEVEREKQGEASIAELESGKAWTLDGEESDDDDGTGRHTSMDVDEDDKLADNVPRESMEVDVDNGTVSTDLQNGDAGAPADDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKDSDLKPKDIEDERSNGRQSRKGSNKSIGRIIPGEESDSDYADSDVEGDPLDEDDDDFMKRVKKTKVEKLSLVDHSKIDYIPFKKNFYIEVKEISKMTLEEVVLYRKQLELKIHGKDVPKPVKSWNQTGLTSKVLDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDALFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEDDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQILAATKANPSMPTPISAPQLISNGGLPISLPSVVGLQAPTVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04423 1820 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 1338 1346 IPR000629 -
Tsu08g04423 1820 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 850 1638 - -
Tsu08g04423 1820 Gene3D - 1136 1393 IPR027417 -
Tsu08g04423 1820 ProSiteProfiles Zinc finger SWIM-type profile. 553 589 IPR007527 GO:0008270
Tsu08g04423 1820 SMART ultradead3 1202 1407 IPR014001 -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 613 1117 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 1098 1114 - -
Tsu08g04423 1820 CDD SF2_C_DEAD 1404 1534 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 1599 1613 - -
Tsu08g04423 1820 CDD DEADc_DDX46 1172 1393 - -
Tsu08g04423 1820 SMART 26again6 564 591 IPR006564 GO:0008270
Tsu08g04423 1820 Coils Coil 727 831 - -
Tsu08g04423 1820 Pfam Helicase conserved C-terminal domain 1417 1525 IPR001650 -
Tsu08g04423 1820 Pfam MULE transposase domain 278 370 IPR018289 -
Tsu08g04423 1820 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1420 1564 IPR001650 -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 644 961 - -
Tsu08g04423 1820 Pfam DEAD/DEAH box helicase 1208 1379 IPR011545 GO:0003676|GO:0005524
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 613 642 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 19 45 - -
Tsu08g04423 1820 Coils Coil 917 951 - -
Tsu08g04423 1820 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1214 1392 IPR014001 -
Tsu08g04423 1820 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 850 1638 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 1 45 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 969 1006 - -
Tsu08g04423 1820 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 1183 1211 IPR014014 GO:0003724
Tsu08g04423 1820 SMART helicmild6 1444 1525 IPR001650 -
Tsu08g04423 1820 Gene3D - 1394 1567 IPR027417 -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 1061 1080 - -
Tsu08g04423 1820 MobiDBLite consensus disorder prediction 1599 1631 - -
Tsu08g04423 1820 Pfam SWIM zinc finger 561 587 IPR007527 GO:0008270
Tsu08g04423 1820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1541 IPR027417 -
Tsu08g04423 1820 Pfam FAR1 DNA-binding domain 62 155 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04423 Tsu-Chr8 62088131 62097504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04423 1170 1545 Eukaryotic Initiation Factors Gene Family AT3G19760 33.156 1.77e-60 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g04423 DEAD 8.5e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04423 K12811 - gmx:100784306 1509.97