Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04417 ATGGGGAGAAGAAACAACGGTGGTGGCGGTGGCGGCGGCGGAGGGGGAAGGTCTCTGCAATTTGCTCTTCGCCGACGAGTTGAATCCTGCAAATCAAAGTACACCACCGCCGAAGAAATCGTCGATCATCTTCGCTCAAATTACCCTGATTACCACCGAACTAAGGGCCAACAACTCCTTCGATTTGTTAACGATGCCCTTAAATCTTCCAATAATATTCCCTCACGGAACCCTAACAAGGACGATGACGACGACGATGATGAAGAGGAGTGTCGAAATTCTTCTCGAAAGAGACGTAAGGATATTACCGATGAATCTGAAGCTCGATTGCAGAAAATGGAATCTCTTCATATCAAAACGAGGATGAGTAAGCAGGTTCCATCATCTTCCTCCGAATCTGTTTCCGATAGTGGTGATGACGGTGCAGTTTCAACTTCAGAGGACGCGATTTATAGTGAGAAAGTTGAACCTGCTTTTGATTTGATGAAAGACATGCTGCGAAATTCCTATACAGGAGCGAAAACAGTACCTGCGACGGAGGAAAAGAACGTTGAATTGGATATGGGGAATTCAAGTAAAGCTACTATTACTGTTAATAGGAATGGTGGTGAATCGAAATTGTATCGGACTACAAAGATACGATTGAAGGGTTCTGGTTCGGGTTCTAATGTTGCCGGTGGTGGTGTTGGTGATGTTGAGATGAAAGGGAAGGAGGGTCCAATGTTTAAGGATTTGGGTGGGATGAAGGATATATTGGAAGAGTTGATGATGGATATTGTGTCATTGTGCAATCCTCAATTGCCTAGACATTTGGGAGTGAAACCGGTGACCGGCATTTTGTTACACGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATAGCGAATGAAACCGGTCTTCCTTTTCATCATATTTCGGCCACCGAGGTGGTTTCTGGAGTTTCAGGTGCATCCGAAGAATATATTAGAGAGCTTTTTGATAAGGCAAAAAGGACTGCTCCTTCAATTGTCTTTATTGATGAGATTGATGCAATTGcttcaaaaagagagaattTACAGCGTGAAATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAGCCAGAGAGTTCTAGTGAACCTCGCGGCTATGTTCTTGTAATTGGAGCCACAAACAGGCCTGATTCTCTTGACCCTGCTCTTAGACGGCCTGGTAGGTTTGATCGTGAGTTTCTTGTTGGTGTCCCTGATGAATCTGCCAGGGAGGAGATCCTTTCCGTGCTTACTCGCAGTCTTAAACTTGATGGTTCATTTGATCTGCGCAAAATAGCCAGGTCCACACCAGGATTTGTTGGAGCTGATTTGGCAGCTTTGGCTAACAAAGCCGGTAATCTGGCAATGAAGAGGATAATTGATGAAAGGAAACATGAATTATCTCAAGATCTCATGCGTGAGAATACTAAAGGCTGGTGGAGAGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGGAATCGGGATGAATCTTGAATCTGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAGGCTGTTGCCAATGAGGCTGGAGCTaatttcattcatattaagGGACCCGAGCTTCTAAATAAATATGTTGGGGAAAGTGAGCTTGCAGTGCGGACATTGTTTAATCGTGCAAGGACTTGTGCACCATGTGTGCTGTTTTTTGATGAGGTTGATGCTCTGACTACTGAACGTGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATCGAGTTAGATGGCGCTGAGCAGCGGAGAGGAGTTTTTGTGATTGGTGCAACAAATAGGCCTGAAGTGATGGACCGCGCTCTCTTACGGCCTGGCAGGTTTGGTAAACTGCTTTATGTTCCTCTTCCAAGTCCAGACGACCGTGTTTTGATATTGAAAGCTCTTGCAAGAAATAAACATATTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAAGCATGTGAGAACCTTAGTGGTGCTGATCTTGCAGAATTGATGAACGAAGCAGTAATGGCTGCTCTTGATGAGAAGTTGGCCTCAATTGAGACAACCTGCGAATCATTGACCATTAGGACAAGTCATTTTGAAGTAGCACTAAGTAAAGTTTCTCCATCTGTGTCAGACAAGCAAAGGCAGTACTACGAGCGTTTGTCAAGAAGCCTTAAAGCGGCATGA 2262 0.4372 MGRRNNGGGGGGGGGGRSLQFALRRRVESCKSKYTTAEEIVDHLRSNYPDYHRTKGQQLLRFVNDALKSSNNIPSRNPNKDDDDDDDEEECRNSSRKRRKDITDESEARLQKMESLHIKTRMSKQVPSSSSESVSDSGDDGAVSTSEDAIYSEKVEPAFDLMKDMLRNSYTGAKTVPATEEKNVELDMGNSSKATITVNRNGGESKLYRTTKIRLKGSGSGSNVAGGGVGDVEMKGKEGPMFKDLGGMKDILEELMMDIVSLCNPQLPRHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSSEPRGYVLVIGATNRPDSLDPALRRPGRFDREFLVGVPDESAREEILSVLTRSLKLDGSFDLRKIARSTPGFVGADLAALANKAGNLAMKRIIDERKHELSQDLMRENTKGWWREPWLPEEINKLAIKMSDFEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFNRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAEQRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSPDDRVLILKALARNKHIDSSVDLSAIGRMEACENLSGADLAELMNEAVMAALDEKLASIETTCESLTIRTSHFEVALSKVSPSVSDKQRQYYERLSRSLKAA 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04417 753 PANTHER AAA-FAMILY ATPASE 25 509 - -
Tsu08g04417 753 MobiDBLite consensus disorder prediction 67 149 - -
Tsu08g04417 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 748 IPR027417 -
Tsu08g04417 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 475 IPR027417 -
Tsu08g04417 753 CDD AAA 517 649 - -
Tsu08g04417 753 Gene3D - 414 483 - -
Tsu08g04417 753 Gene3D - 650 729 - -
Tsu08g04417 753 Pfam AAA+ lid domain 671 712 IPR041569 -
Tsu08g04417 753 Pfam AAA+ lid domain 436 471 IPR041569 -
Tsu08g04417 753 Coils Coil 700 720 - -
Tsu08g04417 753 ProSitePatterns AAA-protein family signature. 383 401 IPR003960 GO:0005524|GO:0016887
Tsu08g04417 753 PANTHER AAA-FAMILY ATPASE 508 748 - -
Tsu08g04417 753 ProSitePatterns AAA-protein family signature. 619 637 IPR003960 GO:0005524|GO:0016887
Tsu08g04417 753 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 25 509 - -
Tsu08g04417 753 Gene3D - 242 413 IPR027417 -
Tsu08g04417 753 SMART AAA_5 515 651 IPR003593 -
Tsu08g04417 753 SMART AAA_5 275 415 IPR003593 -
Tsu08g04417 753 CDD AAA 278 412 - -
Tsu08g04417 753 Pfam ATPase family associated with various cellular activities (AAA) 279 412 IPR003959 GO:0005524|GO:0016887
Tsu08g04417 753 Pfam ATPase family associated with various cellular activities (AAA) 520 648 IPR003959 GO:0005524|GO:0016887
Tsu08g04417 753 Gene3D - 508 744 IPR027417 -
Tsu08g04417 753 MobiDBLite consensus disorder prediction 90 119 - -
Tsu08g04417 753 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 508 748 - -
Tsu08g04417 753 MobiDBLite consensus disorder prediction 121 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04417 Tsu-Chr8 62059138 62064476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04417 508 748 Calmodulin-binding Proteins AT3G56690 46.502 1.95e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04417 K14571 - gmx:100809594 976.467