Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04407 ATGGGGCCAAAGTTTCCTCTGAATCAGTTGAAGACACCAAGTTATTATGTCATTTCTTGTCACAGAAACTATTCTAGAACAATTCTCTCTCAACAAAAATTCCCATTCAAATCTTTAGGTGATAAATGGAAGCTCAACGACCTAACTGCTAgTTCTATCCAAGAAAGATTGAATGTATTGATGTCGAGGACCCAAAACTTTTTGAATGAAGTAACTTCTCCGCTTCCAAAACCCGGTCAAAGTAAGAAGCCTGATCCAGAAAAAGATCCCGGATTTCAAGTTATGGAAGATATATTTATGATAGAGCAAACAATTAACCGCAGAACGCCATATGGGACTCTTTCTCTGGCTGCTGTTATATGTATTGAGCAATTCAGCAGGATGAGTGGATTGACTgggaagaaaatgaagaatatATTTGAAACACTTGTTCCAGAAACTGTATATAGTGATGCCCGTAATTTGGTTGAATACTGCTGCTTTAGATTTTTGTCAAGGGACGACTCAGATATTCATCCTTCCCTCCAGGATCCTGCTTTCCAGAGGCTGATATTCATAACCATGCTTGCCTGGGAAAATCCTTACACTAATTTCCTTTCTAGCAATGCAGAGAAAGCTTCTTTACAGAGTAAACTTGTCACTGAGGAGGCTTTTGTTCGTATTGCTCCCGCAGTCTCTGGTGTGGTTGACCGCCCCACAGTGCACAATCTTTTTAAGGCTCTTGCTGGTGATCAAGAGGGCATTTCTATGGGCATGTGGCTAGCTTACATTCATGAGTTTGTCAAAGTACGTCGAGAACATAGGTCATACCAGATTCCAGAGTTTCCTCAAATTGATGTGGAGAAAATCTTATGCATTGGTTCCAACAATAAGCAGCCTGTTCTGAAATGGGAGAATAATATGGCATGGCCTGGCAAACTCACTCTTACTGATAAAGCAATCTATTTTGAGGCAGCTGGCTTATTGGGAAATAAGAGAGCCATGAGATTGGATCTTACATATGACGGACTGCAGGTAGAGAAGGCAAAAGTTGGGCCTTTAGGGTCTTCACTTTTTGACTCTGCTGTTTCTATTTCTTCTGGTTCAGAGTCGAATTGGTGGGTGCTGGAATTCATCGACTTGGGAGGTGAGATGAGGAGGGATGTTTGGCATGCATTGATTAGCGAAGTCATTGCTTTACACAAGTTCATGCATGAGTATGGAGCTGAAGAGTATGGACCTAATGTTTACGGGGCTCGTAAAGGAAAGCAAAGAGCAACAGCCAGTGCCATTAATGGTATAGCTAGAGTCCAGGCCCTTCAACATTTGCGGAAGTTGCCTGACGATCCTACCAAGCTCGTTCAGTTCTCATATTTACAGAATGCACCAAACGGTGATATTGTCCTCCAAACTTTAGCTGTTAATTATTGGGGAAGTCAACTAGTTACAACATTTATGAACACGCGCAATAAGCCAGAAAATCGACCTTCTAATGAAATAGATGACAGCTATAACCATGTTTTTGACATCGATGGAAGTGTCTACTTGCAGAAGTGGATGAAATCTCCATCTTGGGGGTCTAGTACTTCTACTAGTTTTTGGAAGAACACTTCAACAAAAGGTTTAGTATTAGGTAAGAATCATGTTGTGGCTGACCTATCACTCACTGAAAGAGCAGCCAAAATAAGCAAACAAAAGACCCAGGTTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACACTGAAAGGCATACCCAGCAACATTGATCTTTTCAAGGAGCTAATATTTCCTATCACCTTAACTGTCAAAAACTTTGAAAAGCTAAGGCACTGGGAGGAGCCACACCTGACTATTGGGTTTCTTGGACTTGCATATACAATAATTTTTAGAAACTTGCTGTCATATACGTTTCCAGTGATGCTGATGATCACGGCTGTTGGAATGCTGACAATTAGGGGCCTTAAGGAGCAAGGTCGCCTTGGACGATTTTTTGGTGGAGTCACAATACGTGATCAGCCACCATCAAATACTATACAAAAGATCATTGCTGTAAAAGATGCCATGCGTGACGTTGAGAATATGACGCAGAAAGTGAATGTCTCACTACTCAAAATACGTTCAATTTTACTTTCTGGCAATCCACAGATAACAACTGAGGTTGCTGTGCTGATGTTAACTTGGTCAGCCATTCTCTTCATTGTCCCATTCAAGTACATTCTTTCCTTTCTTCTCTTTGATATGTTTACACGGGAGCTTGAGTTTCGGAAAGAAATGGTTAAGAGATTCATGAAAATGTTAAGAGAGCGGTGGCATGCAGTTCCTGCTGCACCAGTAACAGTTTTACCATTTGAAAATGAAGAATCTAAACCAGAAGTTTCCTTAAAGAAAATTGAGaacaaatcaaaatcacaagGAAACCAGAGCAGTGGCCGGCCTCGTGTTATTGTCAACGGTGTTCGAAGAATGAGAACCTTCCATTATTTCTGGTGTCTCAATTGCCAACGTACTGTCAGAATACCCTCAACAAATACTATAACATATGGCTCTTCTTGCCCTTATTGCTTCCATCAATTGCGTTATGAACTTGATATATCAAGGCCAAGGCTTCTCATGAATGTGACTAATAACAACATGGAGCCTCCTCCTTCTACTAATCAGTTAATAGGTAACTTAGCTTTCATTCTTGATCCATCTCTCAGGAGACAAGACCAAAACAATATAACACCACAATGGGAAACAGAACATGAAgatgatcaaaatcaaaatccacaAGCATGGATTACACTTCGATTCGTAAGACCAAATCGTCCACCAAGGCCTATTGCACCACCGCCACAACCACAAAACTTGGCACCCCAACCCAATGACAATGACGCCCCTTCGTTAGACGAGTTCTTTGATGGGATGATTCACAACAACAGCAGACCAGGGCCGCCTCCGGCATCACCTTCGGCCATTGAAGCCTTGCCAATTGTGAAAGTGACAGAATCACATTTGGCGAGTGACCCGAATTGTCCAATATGCAAAGATGAGTTTGAGGTTGGTGTGGAAGTGAGAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCTTGGCTTCACATGCACAACACTTGCCCCGTATGCCGCCATGAGCTACAAGGGATCGATAATAGTAATGCTAGTTACTACTTTTCCCATAATGAGAATGAGCAACAGAGGTTCATTGGATTTGAGGAATTTACAAGCAGCATTAACTGGATCTGGAGCCAACTTGCTTTGTTTAGGCCTATTCGTGCAGTTCTAGATTGGACGCGGTCCTATTTTGAATTCCATGCTCGTGCTCATAGAAGTAAGATCAAACTCTAA 3339 0.4115 MGPKFPLNQLKTPSYYVISCHRNYSRTILSQQKFPFKSLGDKWKLNDLTASSIQERLNVLMSRTQNFLNEVTSPLPKPGQSKKPDPEKDPGFQVMEDIFMIEQTINRRTPYGTLSLAAVICIEQFSRMSGLTGKKMKNIFETLVPETVYSDARNLVEYCCFRFLSRDDSDIHPSLQDPAFQRLIFITMLAWENPYTNFLSSNAEKASLQSKLVTEEAFVRIAPAVSGVVDRPTVHNLFKALAGDQEGISMGMWLAYIHEFVKVRREHRSYQIPEFPQIDVEKILCIGSNNKQPVLKWENNMAWPGKLTLTDKAIYFEAAGLLGNKRAMRLDLTYDGLQVEKAKVGPLGSSLFDSAVSISSGSESNWWVLEFIDLGGEMRRDVWHALISEVIALHKFMHEYGAEEYGPNVYGARKGKQRATASAINGIARVQALQHLRKLPDDPTKLVQFSYLQNAPNGDIVLQTLAVNYWGSQLVTTFMNTRNKPENRPSNEIDDSYNHVFDIDGSVYLQKWMKSPSWGSSTSTSFWKNTSTKGLVLGKNHVVADLSLTERAAKISKQKTQVVEKTQATIDAATLKGIPSNIDLFKELIFPITLTVKNFEKLRHWEEPHLTIGFLGLAYTIIFRNLLSYTFPVMLMITAVGMLTIRGLKEQGRLGRFFGGVTIRDQPPSNTIQKIIAVKDAMRDVENMTQKVNVSLLKIRSILLSGNPQITTEVAVLMLTWSAILFIVPFKYILSFLLFDMFTRELEFRKEMVKRFMKMLRERWHAVPAAPVTVLPFENEESKPEVSLKKIENKSKSQGNQSSGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTITYGSSCPYCFHQLRYELDISRPRLLMNVTNNNMEPPPSTNQLIGNLAFILDPSLRRQDQNNITPQWETEHEDDQNQNPQAWITLRFVRPNRPPRPIAPPPQPQNLAPQPNDNDAPSLDEFFDGMIHNNSRPGPPPASPSAIEALPIVKVTESHLASDPNCPICKDEFEVGVEVRELPCKHFYHSDCILPWLHMHNTCPVCRHELQGIDNSNASYYFSHNENEQQRFIGFEEFTSSINWIWSQLALFRPIRAVLDWTRSYFEFHARAHRSKIKL 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04407 1112 CDD RING-H2_RNF126_like 999 1040 - -
Tsu08g04407 1112 MobiDBLite consensus disorder prediction 793 807 - -
Tsu08g04407 1112 Pfam Ring finger domain 998 1040 IPR001841 -
Tsu08g04407 1112 PANTHER PROTEIN, PUTATIVE (DUF639)-RELATED 17 799 - -
Tsu08g04407 1112 SUPERFAMILY RING/U-box 979 1045 - -
Tsu08g04407 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 962 1045 IPR013083 -
Tsu08g04407 1112 ProSiteProfiles Zinc finger RING-type profile. 999 1040 IPR001841 -
Tsu08g04407 1112 MobiDBLite consensus disorder prediction 786 807 - -
Tsu08g04407 1112 SMART ring_2 999 1039 IPR001841 -
Tsu08g04407 1112 Pfam Plant protein of unknown function (DUF639) 547 779 IPR006927 -
Tsu08g04407 1112 MobiDBLite consensus disorder prediction 930 945 - -
Tsu08g04407 1112 MobiDBLite consensus disorder prediction 928 976 - -
Tsu08g04407 1112 PANTHER HEAT-INDUCIBLE TRANSCRIPTION REPRESSOR (DUF639)-RELATED 17 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04407 Tsu-Chr8 61997726 62005714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04407 802 1100 C3H Transcription Factor Family AT1G68180 33.444 1.39e-44 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04407 - - gmx:100794179 1290.4