Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04403 atggaCTCAAGCAATAATCATCATCCATGGAAGAATGATGCAACGTTTCAATACTTTGTGTATGAATATATGATCAAAAGAGGAATGCATAAATCCGCTGAGATTTTCATGAACGAAGCTAATGTTCCCGAAACTCATCCTACTGACTTGCAATTTATGGATTcaatgtttgatgatgattcTCCTGAAGGATTCCTTCATGAATGGTGGTCTGTTTTCTATGATGTATTTTCATCTAGACCAAGCTGTCGTCAGGAGTCTCAGCCACGGTCCTCTAATATGATGGTCCCACGAATGACTGATACTTCAACGAACATATCCTCTTTTAGAACCCCTCAAATGTCAATGATTGAGCAGAGGTCTCAACAATTTCAAGCCAGCTCCAGCTCTACCAACATGATGCCACAAACAACTTCTAGATTAATGCCTCAGAGACTGCACAATAATAATCCCATTGGAAATTTGGCTGATAATATTGATCCAAGTTTGGTTGCTCTTATCAATGAAAATGATCAAAACTTCTTCTGA 528 0.3693 MDSSNNHHPWKNDATFQYFVYEYMIKRGMHKSAEIFMNEANVPETHPTDLQFMDSMFDDDSPEGFLHEWWSVFYDVFSSRPSCRQESQPRSSNMMVPRMTDTSTNISSFRTPQMSMIEQRSQQFQASSSSTNMMPQTTSRLMPQRLHNNNPIGNLADNIDPSLVALINENDQNFF 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04403 175 ProSiteProfiles LIS1 homology (LisH) motif profile. 12 44 IPR006594 GO:0005515
Tsu08g04403 175 Pfam LisH 18 40 IPR006594 GO:0005515
Tsu08g04403 175 PANTHER SINGLE STRANDED DNA BINDING PROTEIN 3 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04403 Tsu-Chr8 61941492 61942799 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu08g04403 LisH 1.7e-05 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04403 - - gsj:114387334 142.895