Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04402 ATGTCTAATAGAAAACCACCATTCCCTCGGCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCCAGCAAATTCTGTCTCACGTGAATGTCTCTCTTCATGATGGAGGAGCATTTGTGCTAACAGGTGCAAATGGCTCAGGAAAGACAACTTTCATGCGCATGCTAGCTGGGTTTTCTCGTCCTTCTGCAGGTGAAGTCCTTTGGAATGGCCACGACATTCAAAAATCTGCAATCTTCCATCAGTATAAACTTCAGCTTAACTGGGTCTCCCTCAAGGATGCAATTAATGATAAGTGTAATGTTCTGGACAATATTCAATGGTTTGAACTTCTTGAAGGCAAGCACGGGAAGGCTATGCCTGCGCTTGAGTTGATGGGACTAGGAAGATTGGCTAAGGAAAAGCCAAAGATGCTTTCAATGGGCCAGCGAAAAAGATTGCAACTTGCCAGAATGCTCGCAATTGATCGTCCCATATGGTTGCTAGATGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTCGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATTGCTATTGTAGCAACTCATTTACCCATTGAGATGGAAGATTCCATGGTCTTGAGGCTGCCTCCAAGGTTTCCAAGGAGGATGAGTCATACAGATATGCTTGGCCGGATGGATATCAGttaa 690 0.4406 MSNRKPPFPRLLLNNVSCMRNAQQILSHVNVSLHDGGAFVLTGANGSGKTTFMRMLAGFSRPSAGEVLWNGHDIQKSAIFHQYKLQLNWVSLKDAINDKCNVLDNIQWFELLEGKHGKAMPALELMGLGRLAKEKPKMLSMGQRKRLQLARMLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIAIVATHLPIEMEDSMVLRLPPRFPRRMSHTDMLGRMDIS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04402 229 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Tsu08g04402 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 201 IPR027417 -
Tsu08g04402 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Tsu08g04402 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 226 IPR003439 GO:0005524
Tsu08g04402 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 9 223 IPR005895 GO:0017004|GO:0022857
Tsu08g04402 229 Gene3D - 6 208 IPR027417 -
Tsu08g04402 229 SMART AAA_5 35 223 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04402 Tsu-Chr8 61928510 61929199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04402 24 178 Calmodulin-binding Proteins AT2G36910 29.268 2.00e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04402 - - gmx:100796586 398.667