Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04398 ATGAATGTTCCAATAAATCCAGTGTACATGAGTGTCCTGAAGTCATCACTAATTGACCTGTTTCTCCAGCAATCCAACCTGACTTTCACAACATCAGTAGTCGGGAACGCATCCTTGTTTGAGATCTTGAAGTTTGCCGGTGGGTTAACTGTAATACCAGCGCAGTCGGCTTCTATTTGGCAGATACGCGAGATTCTGTTTAATTTTACTCTTCATAATTCAATATCTGAAGTCCTGGATAAGTTTGATGACTTTGAGGAAGAATTGAGGTTTGGATTGCAACTGAAGTCTGATGAGAATGTGTATGTGGACATAACAAATGCACACGGTTCAACGGTAACTAGTCCTGTAGTAGTGCAGGCTTCAGTCATGCGAGGGTTTGAGAGCCTTTTGCCACAAAGATTGAAACAAATAGCTCAAACCATAAGAGGCTCTGCTAGAAAAAATCTCGGCCTTAATAACGTAGTTTTTGGCAAAGTCAAAGAAATCAGGTTGTCTTCTTTTCTAAAGGATACACTACATGTTTACCCACCTGCTCCTGCTCCATCCCCACAGTTAACTGATCACTCTGAGCCATTAATTTCACCATATCATTCTCCCTCTTATTCTCCAATATCCCCAGTAACTGCTGAGACACCCTGTTTTGACTGTGAAGTATCCCCACCTTCACCATCCATTGCGACTGAGCATCCTCCAGCCTATTCTCCTGTTGTTTCCCCTACATCATATACTGTTGCTCCTGATCTGTCACGTCGTGTAGCCGAGGTTTCTCATGGTTTCAAGCTTCGCCAAGATGTGGAGAGATCCAATAAGTTGGTGTCTCACTTGCTTGCTCCATCCTCTTCATcTTCAGCAGGTAGCGGTGATTTGCAGAGAGAAAACTTGCTAATGGGAATTTTTATGCTTAAAAAGATGAAAATCCCAATGTCAATGGCTTCACTCTTTCAACTACTATTACTGAATCAAAAACGTTCACTCAGCACCAAAGTTTCCACTTCCAAACAGAAAGTGAAACAAATCACAACTCCAAACTTCAACCAATCTTTGGAGGAAATAAAAACCCAGAACTCTTCTTCCGATTTTATCGCTATATCGATGGAAAAAACAGGTTCTTCATCGATCACTCCGTGGCACAATGTTCAACCCTTTGATTCGGCAGAAACGGCTTATCTTAAGGCTAGTCAGTCTGCCCAACGGTTTCTGCTTCTTCAGTTTGCCGTCTGCCCGTTTTCTGTTACAGACTCTAACAACTTTGTTGCTCATCCGGATGAGTTGAAGTTGGGCATGCCTTCTTACAGTTTTCTGTGCCAGACGTCTCAGCTTGCGTCCATGGCTCGCCAGGGTTTTGATTTCAATGCTTGCGTATATGAAGGCATATCATATTTGTCCAGAGCACAAGAATCAGCGGCTAAAATTCGTTTGGGGACTGGTTCTCCATCTCTTGCTGCAATGAAATCTTCTTCATCCCCTACTGTTGCTGATACAGTTTTTGTCGAGAGGATTAGATCGAGGATTAAACATTGGAGAAATACTTGTAAAAAATCTGGCACGACGACAAGCAAAGAAGAAGAAATTATCAACTCTATTAGGAATATTGTCACTTCGGGTATAATTCTGGATTTGCACTGCAGAGAGAGTTGCATAGTATTAAAGAGGAGGAGGGCAAGAAAATTCGTGGATTTCGAGAGGTGA 1692 0.422 MNVPINPVYMSVLKSSLIDLFLQQSNLTFTTSVVGNASLFEILKFAGGLTVIPAQSASIWQIREILFNFTLHNSISEVLDKFDDFEEELRFGLQLKSDENVYVDITNAHGSTVTSPVVVQASVMRGFESLLPQRLKQIAQTIRGSARKNLGLNNVVFGKVKEIRLSSFLKDTLHVYPPAPAPSPQLTDHSEPLISPYHSPSYSPISPVTAETPCFDCEVSPPSPSIATEHPPAYSPVVSPTSYTVAPDLSRRVAEVSHGFKLRQDVERSNKLVSHLLAPSSSSSAGSGDLQRENLLMGIFMLKKMKIPMSMASLFQLLLLNQKRSLSTKVSTSKQKVKQITTPNFNQSLEEIKTQNSSSDFIAISMEKTGSSSITPWHNVQPFDSAETAYLKASQSAQRFLLLQFAVCPFSVTDSNNFVAHPDELKLGMPSYSFLCQTSQLASMARQGFDFNACVYEGISYLSRAQESAAKIRLGTGSPSLAAMKSSSSPTVADTVFVERIRSRIKHWRNTCKKSGTTTSKEEEIINSIRNIVTSGIILDLHCRESCIVLKRRRARKFVDFER 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04398 563 PANTHER F20B24.21 1 294 - -
Tsu08g04398 563 Gene3D - 339 531 IPR036397 GO:0003676
Tsu08g04398 563 PANTHER F20B24.21 1 294 - -
Tsu08g04398 563 SUPERFAMILY Ribonuclease H-like 331 466 IPR012337 -
Tsu08g04398 563 Pfam CAF1 family ribonuclease 340 530 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04398 Tsu-Chr8 61884422 61896136 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04398 5 171 C3H Transcription Factor Family AT3G10810 47.619 3.46e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04398 - - gmx:100788006 358.607