Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04390 ATGAGAAACCAGAAATTGAAAGAGTTTAGGGAACAATTACAAAAAAGTAGTAGGTTTTTTCTTGGATCCAACAAAGTAATGCAAGTAGCTCTTGGTCGTTCTCCTTCTGATGAAATTAAACCTAATCTTCATAAGGTTTCAAAGCTATTGCGTGGAAATGCTGGGATGGTTTTTACCAATCTTTCTAGAGAAGAAATTGAAAGGCTGTTTAATGAATTTGAGGGATATGACTTTGCAAGGACAGGAAGCATTGCCACAGAAAAGGTGGAACTCAAGGAGGGACCTTTAGAGCATTTCACACATGAGATGGAACCCTTTCTTCGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgAGTTGTGGAGCTTGTTTCTGACTATGTTGTTTGTGAAGAGGGAAAGCCTTTGTCACCTGAAGCATCTCGCATACTGCGTTTGATGGGAGTCATGATGGCTACATTTCGACTACACCTGGTTTGCAGATGGAGCTCTGATGATTTTGAACTCTTAATTGACGGGCCTGGTGATTCAGATGTTGAATGA 543 0.4052 MRNQKLKEFREQLQKSSRFFLGSNKVMQVALGRSPSDEIKPNLHKVSKLLRGNAGMVFTNLSREEIERLFNEFEGYDFARTGSIATEKVELKEGPLEHFTHEMEPFLRKQGMPVRLNKGVVELVSDYVVCEEGKPLSPEASRILRLMGVMMATFRLHLVCRWSSDDFELLIDGPGDSDVE 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04390 180 Gene3D - 78 151 IPR043164 -
Tsu08g04390 180 CDD Ribosomal_P0_like 1 137 IPR033867 GO:0000027
Tsu08g04390 180 PANTHER MRNA TURNOVER PROTEIN 4 HOMOLOG 1 174 - -
Tsu08g04390 180 SUPERFAMILY Ribosomal protein L10-like 3 97 IPR043141 -
Tsu08g04390 180 Gene3D - 2 165 IPR043141 -
Tsu08g04390 180 Pfam Ribosomal protein L10 1 73 IPR001790 -
Tsu08g04390 180 Pfam Insertion domain in 60S ribosomal protein L10P 79 149 IPR040637 -
Tsu08g04390 180 PANTHER MRNA TURNOVER PROTEIN 4 MRTO4 1 174 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04390 3 166 Cytoplasmic Ribosomal Protein Gene Family AT3G11250 21.341 4.66e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04390 K14815 - gmx:100500064 313.923