Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04377 atgaaAGGGGTGTGGAATAGAATGCACGGTTTGAAACCAGTGATGCTTATGGTGTTGGTACAAATTGCATATGCTGCAGTTAATGTTCTCTATAAACTTGCTATCAATGATGGAATGACTGTTAAAGTTGCTACTGCTTATCGTCTCGCTTTTGGTTCGGCTTTCACCGTTCCTCTGGCTCTAATTTCTGAAAGGAAGAAGAGGCCAAAGCTGACTTGGAGGGTACTTTTCATGGCATTTCTTTGTGGCCTTTTTGGGGGAAGTTTATTTCAAAATCTTTTCTATGAGGCCTTGGCTTTAACATCAGCAACTTTTGCATCAGCTATCTACAACCTTATTCCAGCCATCACCTTTATTATGGCCATCTCCTGCGGatttgaaaaattaaatttgaggGCAGCAAGTGGAAAAGCTAAGGTTTTAGGAACTGTAATTGGAATTGGTGGAGCAATGATGTTGATTTTTCTCAAAGGTGTAGAAATTAATATCTGGCCTTTCCACATCAACCTTTTGCATCCAGCTCAACACCAAAATAGCCACGTGGCATCACAAAATGTTAATTCTGGTAGTAAATGGTTGGGTGTTTTGTGTGCAGTAGCAAGCTGCTTCTCTTTTTCCTTGTGGCTAATAATTCAGGCTAAGATGAGCAAAGAATATCCAAGTCATTACTCAAGTACAGCTTTAATGTCTACAATGGGAGCAATACAAGCCACTGCTTTTGGTCTTTGTGTTGAAAGAGATTGGAGCCAATGGAAGTTGGGTTGGAATATTAGGTTATTAGCTGTGGCTTACTCGgGAATTGTCGCCTCTGGGTTAGTGGTTATAGTGACTTCGTGGTGTATAAAGATGAGGGGTCCATTATTTGCGTCTGTTTTCAACCCTCTGATGCTTTTGTTTGTGACTATTGTCGCTTCTATGACGTTGgatgaaaatttatatttaggaAGCTTGATTGGAGCAGTGTTGATTGTGTGTGGTTTGTACATGGTTCTTTGGGGTAAGAgtaaagaaatgaaaaagattGCTCAATTGGCTACATCAAAAATTGCCCAAGAAACTGAAGATATAGAAGTTGTTGTTATGCCCACACTAGAAGTAGTAGATCATGATAAATCACATGTCAACAATAATCACACAGAAGTTGATAAAGATCGTGTagattatttatcaaaaaatagagaaattagTAGTAGTATTAGTGATGATCAAGAGATAGAGAAATGTTCAACTAATTAA 1236 0.3673 MKGVWNRMHGLKPVMLMVLVQIAYAAVNVLYKLAINDGMTVKVATAYRLAFGSAFTVPLALISERKKRPKLTWRVLFMAFLCGLFGGSLFQNLFYEALALTSATFASAIYNLIPAITFIMAISCGFEKLNLRAASGKAKVLGTVIGIGGAMMLIFLKGVEINIWPFHINLLHPAQHQNSHVASQNVNSGSKWLGVLCAVASCFSFSLWLIIQAKMSKEYPSHYSSTALMSTMGAIQATAFGLCVERDWSQWKLGWNIRLLAVAYSGIVASGLVVIVTSWCIKMRGPLFASVFNPLMLLFVTIVASMTLDENLYLGSLIGAVLIVCGLYMVLWGKSKEMKKIAQLATSKIAQETEDIEVVVMPTLEVVDHDKSHVNNNHTEVDKDRVDYLSKNREISSSISDDQEIEKCSTN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04377 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 336 - -
Tsu08g04377 411 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Tsu08g04377 411 Pfam EamA-like transporter family 193 331 IPR000620 GO:0016020|GO:0016021
Tsu08g04377 411 PANTHER WAT1-RELATED PROTEIN 12 366 IPR030184 GO:0016021|GO:0022857
Tsu08g04377 411 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Tsu08g04377 411 PANTHER WAT1-RELATED PROTEIN 12 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04377 Tsu-Chr8 61714547 61717103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04377 11 358 Nodulin-like Gene Family AT1G25270 43.103 1.97e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04377 - - gmx:100809587 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01543 02 13652714 13656122 Tsu08g04377 08 61714547 61717103 PCT
Tsu08g04377 08 61714547 61717103 Tsu02g01542 02 13638775 13641786 PCT