Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04375 ATGATAATGGTGCAAATAGCATTTGCTGGTGTTAATGTTCTCTACAAACTTGCTGTTAATGATGGCATGAACTTAAGGATTGTTGTTGCTTACCGTTTTATATTTGCAACTGCTTTCATTGCTCCACTTGCTTTCTTTCTTGAAAGAAAGAAGAGGACAAAGATGACATGGATGGTACTGTTCCAGTCTTTTCTCTGTGGTTTGTTTGGaggatcATTAAGTCAAAACTTCTACTTAGAAGCCCTGGCTTTAACTTCAGCAACATTTGCAACCGCAATGGCCAACCTTATACCAGCAGTAACCTTTATCATGGCCGTTTCCTTAGGgatggaaaaattaaatttgagaaCAAAAGCAGGGAAAGCAAAGATAATAGGCACAATGACTGGAATTAGTGGAGCAATGATATTGACATTTGTTAAAGGAATTGAAATCAAGATGGGTTCATTCCATTTGAACCTTTTGCATCACCAAAACGGTGTCGGATTGCACCCACATGCTACTATATCCAAAGGTAATACAATTATGGGCTCTCTGTGTGCCTTGGCTAGTGCAATCTCTTATGCATCGTGGCTTATTATTAATTCAAAGATGAGTGAAAAGTATCCAACACATTACTCAAGCACAGCATTGATGAGTTTTTGGGCATCACTAATTTCCATTGTGTTTGCTCTCTGCTTTGAAAGGGATTTTAGTGCATGGAGGTTGGGTTGGAATATTAGGCTACTAACGGTTGCCTATGCGGGTATAGTGGTTTCAGGAGCAATGATAGTTGTAATTTCATGGGTAGTACATATGAGAGGTCCACTTTTTGCCTCTGTTTTTAACCCTCTAATGCTTGTCATTGTGGCCTTGGCTAGTTGTACCATGTTGAATGAGAAGCTATATCTTGGAACCATTATTGGAGCAGTTTTGATTGTATGTGGCTTGTATACGGTTGTATGGGGTAAGAgtaaagagaagaagaaaaataatcaattagTGCCATCAAAAAGCTCAAATGAAATTGGCACAGTTGAAATAGTTGTGAGGCATGTAATAGAGGATAAAAGCAACGGTGAAGCTCAAGCATTTGCTGGTGTTAATATTCTTTACAAGCTTGCTGTTAATGATGGCATGAACTTAAGGATTGTTGTTGCTTACCGTTTTATATTTGCAACTGTTTTCATTGCTCCACTTGCTTTCTTTCTTGAAAgGAAGAAGAGGGCAAAGATGACTTGGACGATACTGTTTCAGTCTTTTCTATGCGGTTTGTTTGGAGGAGCATTAGCTCAAAACTTCCACTTAGAAGCCATGTCCTTAACTTCGGTAACATTTACATCCGCAATGGCCAACCTTGTACCAGCTGTAACCTTTATAATGGCTGTTTCCTTAGGgatggaaaaattaaatttgagaaCAAAAGCAGGGAAGGCAAAGATAATAGGTACATTGACTGGAATTGGTGGGGCAATGGTATTGACATTTGTTAAAGGTATTGAAATCAAGATTGGTTCATTTCACTTTAACTTTTTGCATCACCAAAACGGTGTCGGATCACAGCCACAAGCTACTATATCCACTGGTAAAACCATTTTAGGCTCAATATGTGCCTTCGCTAGTACCATCTCTTATGCATTATGGCTTATTATTCATGCAAAATTTAGTGAAAGTTACCCTACTCATTACTCAAGCACAGCATTGATGTCTTTTTGGGCATCACTAATTTCCATTGGGTTTTCTCTTTGTTTTGAGAGGGATTTAAGTCAATGGAGGTTGGGTTGGAATATTAGGCTAATTACTGTTGCTTATGCGGGTATAGTGGTTTCAGGAGTAATGATAGCTGTAACTTCATATTGTGTGCACATGAGAGGTCCATTGTTTGCTTCTGTTTTTAACCCTCTAATGCTTGTCATTGTGGCCTTGGCTAGTTGTACCATGTTGAATGAGAAGCTATATATTGGAACCATTATTGGAGCAGTGTTGATTGTATGTGGCTTGTATGTGGTTTTGTGGGGTAAGAGTGAAGAGATGAAGAAAAAGAACCAATTAGTGCCATCACAAAGCTCTAATAAATTTGGCACAGTTGAAATACTTGTAGAAGATAAAAACAACCATAATACTAGCAATAGTGGTCATTCTCAAGGTAATACTACTTACTTTACAAGTAGTTAA 2154 0.3714 MIMVQIAFAGVNVLYKLAVNDGMNLRIVVAYRFIFATAFIAPLAFFLERKKRTKMTWMVLFQSFLCGLFGGSLSQNFYLEALALTSATFATAMANLIPAVTFIMAVSLGMEKLNLRTKAGKAKIIGTMTGISGAMILTFVKGIEIKMGSFHLNLLHHQNGVGLHPHATISKGNTIMGSLCALASAISYASWLIINSKMSEKYPTHYSSTALMSFWASLISIVFALCFERDFSAWRLGWNIRLLTVAYAGIVVSGAMIVVISWVVHMRGPLFASVFNPLMLVIVALASCTMLNEKLYLGTIIGAVLIVCGLYTVVWGKSKEKKKNNQLVPSKSSNEIGTVEIVVRHVIEDKSNGEAQAFAGVNILYKLAVNDGMNLRIVVAYRFIFATVFIAPLAFFLERKKRAKMTWTILFQSFLCGLFGGALAQNFHLEAMSLTSVTFTSAMANLVPAVTFIMAVSLGMEKLNLRTKAGKAKIIGTLTGIGGAMVLTFVKGIEIKIGSFHFNFLHHQNGVGSQPQATISTGKTILGSICAFASTISYALWLIIHAKFSESYPTHYSSTALMSFWASLISIGFSLCFERDLSQWRLGWNIRLITVAYAGIVVSGVMIAVTSYCVHMRGPLFASVFNPLMLVIVALASCTMLNEKLYIGTIIGAVLIVCGLYVVLWGKSEEMKKKNQLVPSQSSNKFGTVEILVEDKNNHNTSNSGHSQGNTTYFTSS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04375 717 PANTHER WAT1-RELATED PROTEIN 2 343 - -
Tsu08g04375 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 217 320 - -
Tsu08g04375 717 PANTHER WAT1-RELATED PROTEIN 357 697 - -
Tsu08g04375 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 568 668 - -
Tsu08g04375 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 381 485 - -
Tsu08g04375 717 PANTHER WAT1-RELATED PROTEIN 2 343 IPR030184 GO:0016021|GO:0022857
Tsu08g04375 717 PANTHER WAT1-RELATED PROTEIN 357 697 IPR030184 GO:0016021|GO:0022857
Tsu08g04375 717 SUPERFAMILY Multidrug resistance efflux transporter EmrE 31 126 - -
Tsu08g04375 717 MobiDBLite consensus disorder prediction 697 717 - -
Tsu08g04375 717 Pfam EamA-like transporter family 176 314 IPR000620 GO:0016020|GO:0016021
Tsu08g04375 717 Pfam EamA-like transporter family 3 136 IPR000620 GO:0016020|GO:0016021
Tsu08g04375 717 Pfam EamA-like transporter family 526 664 IPR000620 GO:0016020|GO:0016021
Tsu08g04375 717 Pfam EamA-like transporter family 360 487 IPR000620 GO:0016020|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04375 Tsu-Chr8 61662866 61693782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04375 357 685 Nodulin-like Gene Family AT1G68170 43.544 3.01e-86 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04375 - - jre:109013425 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01545 02 13666517 13671065 Tsu08g04375 08 61662866 61693782 PCT