Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04365 ATGGGAATGAATGAATCACGTGTGTGTGGGAAACACTGCTGTTCGAGTCTTGCGCCACTTTCTCCATTCATTCCACATCTTCATCtGTGTTTCTCTGCTGTTGATAACAAAATGGTTGGAAGTGTTGACGTTTTGGGCGATGATTTGAGCACTAACGGAGCAGTTGAAGTATTGCCTGATGATTTTGATGTGGCTGCCATTATCAAAGATCCTTTGCCTCCTGTAGTTGCAGAAAATGGCATTGACAAGGTAGAGGGTCAGATCAATGCGGGAAAAGAGAGAAGGGAAATAGTATTGGGGAGAAATATTCATACCACGTGTCTAGAAGTCACGGAGCCAGAAGCAGATGATGAGATTACTGGGGATCGTGATGCTCATATGGCAAGTGTGTTGGCCAGATACAGAAAATCTTTAACTGAAAGGACAAAGTATCATTTAGGCTACCCCTATAATTTGGATTTCGATTATGGTGCACTCTCTCAACTTCAGCACTTTTCCATAAACAACCTTGGAGATCCATTTATTGAAAGCAATTATGGTGTCCACTCCCGGCAGTTTGAAGTTGGTGTTTTGGATTGGTTTGCCAGATTGTGGGAACTGGAGAAAAATGAATACTGGGGCTATATAACAAACTGTGGCACAGAAGGCAATCTCCATGGCATCCTAGTTGGGAGAGAAGTGTTACCAGATGGGATTTTGTATGCCTCACGGGAGTCacattattcaatttttaaagcTGCCCGTATGTACAGAATGGAATGTGTGAAGGTTGAGACTCTTTGGTCTGGCGAGATTGATTGTGATGATTTCAAGGCTAAACTTCTTTGCCACCAGGACAAGCCAGCAATTATAAATGTGAACATAGGTACAACTGTGAAAGGAGCAGTGGATGATCTTGATCTGGTCTTAAAGAAACTTGAAGAAGCTGGATTTTCACATGACAGGTTCTATATCCATGTTGATGGGGCTTTGTTTGGTCTCATGATGCCATTCGTGAAACGAGCTCCGAAAGTTACTTTTAAGAAACCTATTGGCAGTGTCAGTGTTTCTGGCCACAAATTTGTGGGGTGCCCCATGCCTTGTGGTGTGCAGATAACAAGATTGGAGCATATTAATGTTCTTTCCAGGAATGTAGAATACCTTGCTTCAAGAGATGCCACAATCATGGGTAGTCGAAATGGCCATGCTCCCATATTCCTTTGGTATACCTTGAACCGGAAAGGATACAGAGGCTTTCAGAAAGAAGTACAGAGATGCTTGCGAAATGCACACTACTTCAAAGACCGCCTTATTGAGTCTGGGATTGGTGCAATGCTTAATGAGCTTAGCAGCACGGTTGTATTTGAGCGTCCACATGATGAGGAATTTATACGCAAGTGGCAGTTAGCATGCAAGGGAAACATCGCTCATGTGGTGGTGATGCCAAACGTCACTATTGAGAAGCTTGATGATTTTCTAAACGAGCTTGTGCAGAAGCGTGCTACCTGGTTTGAAGATGAGAAGTGTCAACCATATTGTATAGCATCAGATGTAGGTGAAAACAGTTGCCTATGTGCACTGCATAAGTAA 1569 0.4264 MGMNESRVCGKHCCSSLAPLSPFIPHLHLCFSAVDNKMVGSVDVLGDDLSTNGAVEVLPDDFDVAAIIKDPLPPVVAENGIDKVEGQINAGKERREIVLGRNIHTTCLEVTEPEADDEITGDRDAHMASVLARYRKSLTERTKYHLGYPYNLDFDYGALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKNEYWGYITNCGTEGNLHGILVGREVLPDGILYASRESHYSIFKAARMYRMECVKVETLWSGEIDCDDFKAKLLCHQDKPAIINVNIGTTVKGAVDDLDLVLKKLEEAGFSHDRFYIHVDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRLEHINVLSRNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQRCLRNAHYFKDRLIESGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHVVVMPNVTIEKLDDFLNELVQKRATWFEDEKCQPYCIASDVGENSCLCALHK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04365 522 Gene3D - 160 404 IPR015421 GO:0003824
Tsu08g04365 522 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 346 367 IPR021115 GO:0016831
Tsu08g04365 522 PANTHER SERINE DECARBOXYLASE 38 522 - -
Tsu08g04365 522 Pfam Pyridoxal-dependent decarboxylase conserved domain 232 441 IPR002129 GO:0016830|GO:0019752|GO:0030170
Tsu08g04365 522 PANTHER - 38 522 - -
Tsu08g04365 522 SUPERFAMILY PLP-dependent transferases 141 491 IPR015424 -
Tsu08g04365 522 Gene3D Aspartate Aminotransferase, domain 1 405 493 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04365 Tsu-Chr8 61568947 61574154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04365 245 428 Calmodulin-binding Proteins AT1G65960 27.273 3.23e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04365 K25193 - gmx:100785163 900.197