Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04364 ATGTCTGATGCGGATGAGTTTCGTTGCTTCATTGGCGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATGCATTTGAAAAGTATGGTAAGCTGCTTGAGGCAAAGgtGGTGGTTGACAAGTTCTCTGGACGTTCACGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAGGAGGCTATTGAGGCTATGAATGGAATCGACTTGGATGGTCGAACTATTACAGTTGATAAAGCTCAGCCACAAGGATCAAGTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTAGTCGAGGGTCTAATGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCAAGGGAATGTCCTAGTGAAGGAGGAGAAAGAGGGGGAAGGTATGGGGGCAGGGAAAGTAGATATAGCGGTGGCTATGGTCCTGATAGGAATGCAGATCGCTCTTCTGGTGGGCGTGACAGGGATGGTGGTGGACGTGACAGGGATGGTGGAGGTCGCGACAGGGATGGTGGTGGACGTGACCGTGATCGTGATCGTGCTGGACCGTATGAGCGTCGTGGATCTAGTGGCTTTCGTTGA 636 0.4953 MSDADEFRCFIGGLAWSTSDRKLKDAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSSRDDDDRHRERGRDSRDRNRGRDYGGSRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPDRNADRSSGGRDRDGGGRDRDGGGRDRDGGGRDRDRDRAGPYERRGSSGFR 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04364 211 PANTHER TRANSFORMER-2-RELATED 1 163 - -
Tsu08g04364 211 SMART rrm1_1 8 81 IPR000504 GO:0003723
Tsu08g04364 211 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 163 - -
Tsu08g04364 211 ProSiteProfiles Zinc finger CCHC-type profile. 123 138 IPR001878 GO:0003676|GO:0008270
Tsu08g04364 211 MobiDBLite consensus disorder prediction 165 204 - -
Tsu08g04364 211 Gene3D - 2 118 IPR012677 -
Tsu08g04364 211 Gene3D - 119 175 - -
Tsu08g04364 211 MobiDBLite consensus disorder prediction 76 211 - -
Tsu08g04364 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Tsu08g04364 211 MobiDBLite consensus disorder prediction 86 112 - -
Tsu08g04364 211 MobiDBLite consensus disorder prediction 135 149 - -
Tsu08g04364 211 SUPERFAMILY Retrovirus zinc finger-like domains 115 140 IPR036875 GO:0003676|GO:0008270
Tsu08g04364 211 SUPERFAMILY RNA-binding domain, RBD 4 117 IPR035979 GO:0003676
Tsu08g04364 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Tsu08g04364 211 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Tsu08g04364 211 Pfam Zinc knuckle 122 138 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04364 Tsu-Chr8 61552311 61553954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04364 10 84 Eukaryotic Initiation Factors Gene Family AT1G71770 36.000 2.51e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04364 - - lang:109329957 239.195