Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04350 ATGGAACAAGTGACTTCATCTTATAAAGCTTGGTTTCTTTTTTGGGCAATTTTGGTGTTTGATTTAGTGTTTAAAGCTTCTTCTAATGTGGAAGGTGATGCACTGAATGCATTGAAGAGCAGCTTGAGTGATCCTAATAATGTTCTTCAAAGTTGGGATGCTACTCTTGTGAATCCCTGTACGTGGTTTCATGTTACATGCAATGGTGATAACAGTGTGACCCGTGTTGATCTTGGAAATGCGGATCTTTCTGGTACACTGGTTACACAACTTGGTGATCTCTCAAATCTGCAGTACTTGGAACTTTACAGTAATAATATAACAGGAAAAATCCCAGAAGAGCTAGGAAATTTGACAAACTTAGTGAGTTTGGATCTTTACTTGAACAATTTAAGTGGTAACATACCGACTACACTGGGGAACCTTCAAAAACTACGTTTCCTGCGTCTCAATAATAACACCTTGACTGGCCACATTCCCGTGCTTTTGACAAATGTTTCTTCGCTGCAAGTTCTTGATCTCTCAAACAACAATTTAGAAGGGAATGTCCCAGTGAATggttcattttcattatttactCCTATCAGTTATCAAAATAATCCTCGCTTGATACAACCTAAAAATACTCCTGCACCACTTTCTCCACCGTCACCATCTTCTTCAGGTTTTAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCAGCTCCTGCAATTGCACTTGCGTATTGGCGAAAAAGAAAACCAGCGGACCATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCTCTACGTGAGCTTCTGGTAGCAACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCTCACTTGTAGCTGTAAAAAGACTTAAAGAGGAACGCACACAGGGCGGGGAGCTGCAATTTCAAACAGAAGTGGAAATGATCAGTATGGCTGTGCATCGTAATTTGCTTCGGCTTCGTGGTTTTTGCATGACATCTACCGAACGTTTGCTTGTGTATCCTTACATGGCCAATGGAAGTGTAGCATCATGTTTACGAGAACGTAGCGAGTCTGATCCGCCGCTTGAATGGCAAATGCGAAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGAATTTGAAGCAGTTGTGGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGATACCCATGTCACTACTGCTGTTCGTGGTACGATTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAATCTTCAGAAAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTCGATCTAGCACGTCTTgccaatgatgatgatgttatgtTGCTTGATTGGGTTAAAGGACTTCTCAAAGACAAGAAGTTAGAAACACTGGTAGATGCAGAGTTAAAGGGAGATTATGCTGATGAGGAGGTAGAGCAGCTAATCCAAGTGGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTTAGAATGCTAGAAGGTGATGGCTTGGCCGAAAAATGGGAGCAATGGCAGAAAGAAGAAACGTATCGACAAGATTTTAACAACAACCACATGCATCACCCTAATGCAAATTGGATAGTAGTAGATTCAACCTCAAATATTCAGCCAGATGAACTCTCAGTGACTTCATTTTCTAAACATTCATTTCTTTTTTGGGCAATTTTGATGCTTCATTTTCTGCTTAAAGCTTCTTCCAATCCAGAAGGTGATGCCTTATTTGCATTGAAGAACAGCTTGAATGATCCTAAAAATGCTCTTCAAAGTTGGGATAATACCCTTGTCAATCCCTGCACATGGTTTCATGTTCAGTGTAATAATAATGCTGATAAAAGTGTAACCCGTGTTGATCTTGGAAATATGGACCTTTCTGGTACACTGGTTTCAGAACTTGGTGATCTACCAAATTTGCAGTCTTTGGcactttataataataatataacaggCACAATCCCGAAAGAGCTCGGAAATTTGACAAACTTGGAGAGCTTGGATCTTTACTTGAACAATTTAAGTGGTACTATACCGGATACATTGGGCAAGCTTCAAAAACTACGTTTTCTGCGTCTCAATAATAACACCTTGACTGGCCGCATTCCCATTTCATTGACAAATATTTCAACGCTGCAAGTTCTTGATCTCTCAAGCAACAATCTAGAAGGGGATGTTCCAGAGAATggttcatttttattatttacccCTGTCAGTTATCATAATAATCCTCACTTGAAACAACCAACAATCATTCCTGCGCCACTTTCTCCACCGTCACCAGCTTCTTCAGGCTCCTCTAATACTGGAGTTATTGCTGGAGGAGTTGCTGTTGGTGCTGCTTTAATGTTTGCTGCCCCTGCAATTGCACTTATTTATTGGCGCCGAAAAAGAAAACCACAAGATCATTTCTATGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTTAAAAGGTTTTCGCTGCATGAGCTTCTAGTAGCAACAGATAACTTCCGTAATGACAACATTCTAGGTAGAGGTGGATTCGGAAAGGTTTATAAAGGACGCTTAGCTGATGGTACACTTGTAGCAGTAAAAAGACTAAAAGAGGAACGTGCACAGGGTGGTGAGCTGCAATTTCAGACAGAAGTGGAAATGATCAGTATGGCTGTGCATCGTAATTTGCTTCGGCTTTGTGGTTTTTGCATGACATCTACCGAACGTTTGCTTGTGTATCCTTTGATGGCTAATGGAAGTGTAGCATCATGTTTACGAGAACGTAATGACTCTCAACCACCGCTTGAGTGGCAAATGCGAAAGAATATTGCGCTGGGAGCTGCCAGGGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGATGAATTTGTAGCAGTTGTTGGAGATTTCGGCTTAGCAAGGGTTATGAATTACAAAGATACTCATGTTACTACTGCTGTTCGTGGTACACTTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACCGATGTTTTTGGATATGGTGTGACGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTTGCTCGTCTTGccagtgatgatgatgtgatgtTGCTTGATTGGGTTAAAGGACTTCTCACAGACAAGAAGTTGGAAACACTTGTAGATCCAGAATTAAAAGGAGATTACGACGATGACGAGGTAGAGCAGTTATTCCAAGTGGCTTTACTATGCACACAAGGGTCCCCTATGGAAAGACCAAAGATGTCCGAGGTGGTTAGAATGCTAGAAGGTGATGGTTTGGTCGAAAAATGGGAGCAATGGCAGAAAGAAGAGACATATCGACAAGATTTTAGCAACAATCGCATGCATTACCCTAATGCAAATTGGATAGTGGTAGATTCAACTTCAAATATTCATCCAGATGAACTGTCAGGCCCTAGATAA 3696 0.405 MEQVTSSYKAWFLFWAILVFDLVFKASSNVEGDALNALKSSLSDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNADLSGTLVTQLGDLSNLQYLELYSNNITGKIPEELGNLTNLVSLDLYLNNLSGNIPTTLGNLQKLRFLRLNNNTLTGHIPVLLTNVSSLQVLDLSNNNLEGNVPVNGSFSLFTPISYQNNPRLIQPKNTPAPLSPPSPSSSGFSNTGAIAGGVAAGAALLFAAPAIALAYWRKRKPADHFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTSTERLLVYPYMANGSVASCLRERSESDPPLEWQMRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELKGDYADEEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNHMHHPNANWIVVDSTSNIQPDELSVTSFSKHSFLFWAILMLHFLLKASSNPEGDALFALKNSLNDPKNALQSWDNTLVNPCTWFHVQCNNNADKSVTRVDLGNMDLSGTLVSELGDLPNLQSLALYNNNITGTIPKELGNLTNLESLDLYLNNLSGTIPDTLGKLQKLRFLRLNNNTLTGRIPISLTNISTLQVLDLSSNNLEGDVPENGSFLLFTPVSYHNNPHLKQPTIIPAPLSPPSPASSGSSNTGVIAGGVAVGAALMFAAPAIALIYWRRKRKPQDHFYDVPAEEDPEVHLGQLKRFSLHELLVATDNFRNDNILGRGGFGKVYKGRLADGTLVAVKRLKEERAQGGELQFQTEVEMISMAVHRNLLRLCGFCMTSTERLLVYPLMANGSVASCLRERNDSQPPLEWQMRKNIALGAARGLAYLHDHCDPKIIHRDVKAANILLDDEFVAVVGDFGLARVMNYKDTHVTTAVRGTLGHIAPEYLSTGKSSEKTDVFGYGVTLLELITGQRAFDLARLASDDDVMLLDWVKGLLTDKKLETLVDPELKGDYDDDEVEQLFQVALLCTQGSPMERPKMSEVVRMLEGDGLVEKWEQWQKEETYRQDFSNNRMHYPNANWIVVDSTSNIHPDELSGPR 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04350 1231 Gene3D Transferase(Phosphotransferase) domain 1 368 585 - -
Tsu08g04350 1231 Gene3D Transferase(Phosphotransferase) domain 1 982 1199 - -
Tsu08g04350 1231 ProSitePatterns Protein kinases ATP-binding region signature. 297 319 IPR017441 GO:0005524
Tsu08g04350 1231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1028 1040 IPR008271 GO:0004672|GO:0006468
Tsu08g04350 1231 ProSiteProfiles Protein kinase domain profile. 905 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04350 1231 SMART LRR_typ_2 142 165 IPR003591 -
Tsu08g04350 1231 SMART LRR_typ_2 94 118 IPR003591 -
Tsu08g04350 1231 SMART LRR_typ_2 166 191 IPR003591 -
Tsu08g04350 1231 SMART LRR_typ_2 707 730 IPR003591 -
Tsu08g04350 1231 SMART LRR_typ_2 731 755 IPR003591 -
Tsu08g04350 1231 Gene3D Phosphorylase Kinase; domain 1 874 980 - -
Tsu08g04350 1231 Gene3D Phosphorylase Kinase; domain 1 260 367 - -
Tsu08g04350 1231 SMART serkin_6 905 1179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04350 1231 SMART serkin_6 291 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04350 1231 ProSitePatterns Protein kinases ATP-binding region signature. 911 933 IPR017441 GO:0005524
Tsu08g04350 1231 PANTHER BNAA08G11770D PROTEIN 11 612 IPR031048 GO:0004675|GO:0005102|GO:0006468
Tsu08g04350 1231 Gene3D Ribonuclease Inhibitor 28 211 IPR032675 -
Tsu08g04350 1231 PANTHER BNAA08G11770D PROTEIN 622 1231 IPR031048 GO:0004675|GO:0005102|GO:0006468
Tsu08g04350 1231 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 612 - -
Tsu08g04350 1231 SUPERFAMILY Protein kinase-like (PK-like) 270 566 IPR011009 -
Tsu08g04350 1231 Pfam Protein kinase domain 292 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04350 1231 Gene3D Ribonuclease Inhibitor 639 822 IPR032675 -
Tsu08g04350 1231 SUPERFAMILY L domain-like 640 806 - -
Tsu08g04350 1231 ProSiteProfiles Protein kinase domain profile. 291 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04350 1231 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Tsu08g04350 1231 Pfam Leucine rich repeat N-terminal domain 640 679 IPR013210 -
Tsu08g04350 1231 Pfam Leucine rich repeat 708 768 IPR001611 GO:0005515
Tsu08g04350 1231 SUPERFAMILY Protein kinase-like (PK-like) 884 1180 IPR011009 -
Tsu08g04350 1231 PRINTS Leucine-rich repeat signature 169 182 - -
Tsu08g04350 1231 PRINTS Leucine-rich repeat signature 779 792 - -
Tsu08g04350 1231 MobiDBLite consensus disorder prediction 203 222 - -
Tsu08g04350 1231 Pfam Protein tyrosine and serine/threonine kinase 908 1179 IPR001245 GO:0004672|GO:0006468
Tsu08g04350 1231 SUPERFAMILY L domain-like 31 193 - -
Tsu08g04350 1231 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 622 1231 - -
Tsu08g04350 1231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04350 Tsu-Chr8 61401252 61413217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04350 13 609 Receptor kinase-like Gene Family AT4G33430 77.209 0.0 948
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu08g04350 PK_Tyr_Ser-Thr 8.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04350 K13416 - gmx:100800522 1037.33