Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04336 ATGGCAAATAATGGTGTTCCTCTTCAAGTCCCGATGCTCACAATGAGCAACTATGACAATTGGAGTCTAAGAATGGTGGCTCTCCTTGGCGCACACGACGTGTGGGAGATAGTCGAGAAAGGCCTTGTGATCCCGGAGAATGAAGGAACTCTATCTCAAACTCAAAAGGATAGTTTGAGAGACTCAAGGAAGAAAGACAAGAAGGCTCTCTGTCTAATCTATCAAGGATTAGATGAAGACACGTTCGAGAAGGTCTCGAGAGCAAAGACGGCTAAAGAAGCATGGGAGAAACTCCAAACCTCTTACAAGGGAGTCGATCAAGTGAAGAAGGTACGTCTTCAAACACTAAGAAAAGAGTTTGAAGCTTTGCATATGAAAGAAGGTGAACTTATTTCTGATTACTTCTCACGAGTTTTGACGGTTACTAATAACctaaaaagaaacggagagaAGTATGATGATGTAAGAATCATGGAGAAAGTTCTTAGATCGTTAGATCCAAAGTTTGAGCATATTGTCACCGTCATCGAAGAGACAAAATATTTGGAGGTCATGACAATAGAGCAACTTCTTGGGTCGTTGCAAGCTTATgaggaaaggaaaaagaagaaggaagacaTCGAGGAGCAAGTACTCAAGACACAAGTCGATTCACCTAGAGAAGAGCATGGTCGAAGCAACCAAAGACGAGGTGACGATCGAGGACGTGGACGTGGTCGTGGATATGGAGGCGAACGAGGTTGGACGCCTAATGATGACAACAACCAAAGAGGAGAAATCTCATCAAGAGGTCGTGGGAGAGGATCTCCAAAACCAAGGTACGATAAGTCACGGGTCAAATGCTACAATTGTGAAAAGTTTGGGCATTATGCTTCCGAATGTAGAGCTCCTAGCAATCGTAAAGTTGAAGAGAAGGCCAACTATGTTGAAAAAATAAGCCAAGAAGACGGGACGTTATTGTTGGCGCACAAAGACAATGAAAGAGGTGGAGATAATCAATGGTACCTTGACAGTGGTGCAAGCAACCATATGTGCGGGCGAAGAAGCATGTTCGTAGAGCTAGATGAATCAGTAAACGGGAACGTGGCTTTTGGAGATGAATCAAAAGTGGCAGTGAAAGGTAAAGGAAATGTACTCATCCATTTGAAGAATGGAGATCATCAATTTATTTCCAATGTTTACTATGTGCCAAACATGAAGAGCAACATCTTGAGTCTAGGACAACTCTTAGAGAAAGGTAATGACATTCAATTGAAGAATAATAACCTTTCTATAAGAGATCATTCAAACAAGTTCATTGCTAAGGTGCCGATGTCAAGAAATAGAATGTTCGTGCTCAACATACAAAACGATGTCGCGCAATGTCTCAAGATGTGCTACAAAGAGGATTCGTGGCTTTGGCATCTTCGATTTGGGCATCTCAATTTTGGAGGATTAGAGTTGCTATCTAAGAAGGAAATGGTTAGAGGGTTGCCTTACATTAATCACCCCAATCAAGTATGTGAAGGATGTCTACTTGGAAAGCAGTTCAAAATGAGTTTTTCCAAGGAGTCAAGCTCAAGAGCGCAAAAGCCATTGGAGCTCATACACACGGATGTGTGCGGTCCGATCAAGCCAAGATCACTTGCTGATGTTTGTGTGATTCTCTATGCTCCCAATTTTGAAGGGCAGGGATTTGTTGAACCTGAAACATGGCCTAAAGACACAAGAACGGTACAAAAAGTTCTTCAAAAGTACTACAATACAACAATTGATAGGCGTCATAAGATCTATAATGTTCAAGAGTATTTCaaggaaaagataaaaaaagttgaatccGACATTTCCAACGTGCACAAAGAGATGCTAAAGGTCATGTATCCGACGTGGAATGAATCTTTCAATTCTCTTGGAGAGGACCAATTGAGGTTATTTGCTAGCATGTTGGATTCAAAGCTTGATGCTTGCTATCAAAGGATGAATATGCTAAAAGGAGATCATAATGGAAAAGCAATAACCGAATCACACAAGGTTGATAAACCTAATAGTCATACTCCTTATTTAACTTCAAATCCAAATAGCTACTTCAATCTCATGCAAAACAACTTGTCTCTTGAACAAATTTATACTCCATTGATGAGTATTAGTGATAAAAATCCCTTAGGATTTTGGCCACTTGAATTGGGGCAGAGCTCtcaaccttcttcttcttcgatgTTTTCCGGCGGTGCAGAAGCTTCCTATCAGGTGGAGTCTAAGGAGTCTTATCCTTGCAATCATGTTGATGCTAATTGGGCTGATCAAGTTGATGCTAGTAGTGTTACCTATGATCCTAAAATGCAAACTCCTTCTTTTCAGAATCTTCCAAACCACATGGATTTCAACTTAATGGATTTTATGATATAA 2385 0.392 MANNGVPLQVPMLTMSNYDNWSLRMVALLGAHDVWEIVEKGLVIPENEGTLSQTQKDSLRDSRKKDKKALCLIYQGLDEDTFEKVSRAKTAKEAWEKLQTSYKGVDQVKKVRLQTLRKEFEALHMKEGELISDYFSRVLTVTNNLKRNGEKYDDVRIMEKVLRSLDPKFEHIVTVIEETKYLEVMTIEQLLGSLQAYEERKKKKEDIEEQVLKTQVDSPREEHGRSNQRRGDDRGRGRGRGYGGERGWTPNDDNNQRGEISSRGRGRGSPKPRYDKSRVKCYNCEKFGHYASECRAPSNRKVEEKANYVEKISQEDGTLLLAHKDNERGGDNQWYLDSGASNHMCGRRSMFVELDESVNGNVAFGDESKVAVKGKGNVLIHLKNGDHQFISNVYYVPNMKSNILSLGQLLEKGNDIQLKNNNLSIRDHSNKFIAKVPMSRNRMFVLNIQNDVAQCLKMCYKEDSWLWHLRFGHLNFGGLELLSKKEMVRGLPYINHPNQVCEGCLLGKQFKMSFSKESSSRAQKPLELIHTDVCGPIKPRSLADVCVILYAPNFEGQGFVEPETWPKDTRTVQKVLQKYYNTTIDRRHKIYNVQEYFKEKIKKVESDISNVHKEMLKVMYPTWNESFNSLGEDQLRLFASMLDSKLDACYQRMNMLKGDHNGKAITESHKVDKPNSHTPYLTSNPNSYFNLMQNNLSLEQIYTPLMSISDKNPLGFWPLELGQSSQPSSSSMFSGGAEASYQVESKESYPCNHVDANWADQVDASSVTYDPKMQTPSFQNLPNHMDFNLMDFMI 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04336 794 MobiDBLite consensus disorder prediction 202 241 - -
Tsu08g04336 794 PANTHER - 53 373 - -
Tsu08g04336 794 MobiDBLite consensus disorder prediction 202 275 - -
Tsu08g04336 794 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Tsu08g04336 794 PANTHER DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11A-LIKE 53 373 - -
Tsu08g04336 794 SUPERFAMILY Retrovirus zinc finger-like domains 262 300 IPR036875 GO:0003676|GO:0008270
Tsu08g04336 794 Pfam GAG-pre-integrase domain 450 509 IPR025724 -
Tsu08g04336 794 ProSiteProfiles Zinc finger CCHC-type profile. 280 295 IPR001878 GO:0003676|GO:0008270
Tsu08g04336 794 Coils Coil 187 207 - -
Tsu08g04336 794 Pfam Zinc knuckle 280 295 IPR001878 GO:0003676|GO:0008270
Tsu08g04336 794 Pfam gag-polypeptide of LTR copia-type 63 203 - -
Tsu08g04336 794 Pfam Domain of unknown function (DUF4219) 13 39 IPR025314 -
Tsu08g04336 794 MobiDBLite consensus disorder prediction 258 275 - -
Tsu08g04336 794 Gene3D - 270 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04336 Tsu-Chr8 61306218 61311798 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04336 543 646 Type I MADS-box Gene Family AT5G55690 33.333 1.67e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04336 - - aly:110224828 856.67