Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04330 ATGATGACAGTAGAAGAGAGAAAGGAGTTAATGTTTTTCAATGATGAGACAAAATTTCAAATGGGAGAACTTCTTAGAGCTTCTGCTGAGGCACTAGGACATGGAATTATGGGGAATAGTTATAAGGCTATGTTGAATAATGGACCTAACATTGTTGTGAAGAGGTTAAGGGACTTGAAACCATTTACTAAGGAGGAATTTGCAAATATAGTGAAAATTATTGCTGATCTTAAACATCCTAATTTGTTGTCTTTGCTTGCTTATTATCATTCAAGAGATGAGAAGTTGATGCTCTATAGATATGCTCAGAATGGAAATCTTTACTCTAGACTTCATGATGGAAGAGATGGAAATAGGGTTCCATTCAATTGGAACTCAAGATTATTAGTGGCAAGAGGCGTGGCTAGAGCATTAGAGTACCTTCACCTCAACAACAAGATCCATAACATTGTCCCTCATGGAAATCTAAAGTCATCAAATGTACTATTTGATGAAAAAGATTCAGTTCTTGTATCTGACTTTAGTCTTGCATCCTTAATAGCACAACCAATTGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGATATACAAGAAAAGTTACAATGCAATCAGATGTTTGGAGCTATGGATCACTTTTAATAGAAATTCTAACTGGGAAAGTTTCTATGTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTAATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTTGACAAAGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGCATTGAGAGGTTTCCTGAGAAACGTCCTGAGATGAAAGAGGTAGTTAGAGAAGTGGAGAAAATACAACAAGTACATTTGATGTCTGAAGATGAGGATGATGTTTCTTGTGATAGGTCTCTAACTGATGATTCATTTTCAACTAGTAACTCAGGGATTTTTATTGGAGATTAA 1008 0.3631 MMTVEERKELMFFNDETKFQMGELLRASAEALGHGIMGNSYKAMLNNGPNIVVKRLRDLKPFTKEEFANIVKIIADLKHPNLLSLLAYYHSRDEKLMLYRYAQNGNLYSRLHDGRDGNRVPFNWNSRLLVARGVARALEYLHLNNKIHNIVPHGNLKSSNVLFDEKDSVLVSDFSLASLIAQPIAAQHMVVYKSPEYGYTRKVTMQSDVWSYGSLLIEILTGKVSMCSAPQGTNGVDLCSWVNRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMKEVVREVEKIQQVHLMSEDEDDVSCDRSLTDDSFSTSNSGIFIGD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04330 335 SMART serkin_6 26 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04330 335 Pfam Protein tyrosine and serine/threonine kinase 30 296 IPR001245 GO:0004672|GO:0006468
Tsu08g04330 335 Gene3D Transferase(Phosphotransferase) domain 1 102 323 - -
Tsu08g04330 335 ProSiteProfiles Protein kinase domain profile. 26 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04330 335 PANTHER OS05G0588300 PROTEIN 2 332 - -
Tsu08g04330 335 PANTHER RECEPTOR-LIKE KINASE 2 332 - -
Tsu08g04330 335 SUPERFAMILY Protein kinase-like (PK-like) 30 304 IPR011009 -
Tsu08g04330 335 Gene3D Phosphorylase Kinase; domain 1 2 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04330 Tsu-Chr8 61264255 61265893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04330 3 312 Receptor kinase-like Gene Family AT2G36570 39.877 7.63e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu08g04330 PK_Tyr_Ser-Thr 8.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04330 - - mtr:MTR_2g008740 637.106