Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04316 ATGGATAGTCTTTGTTGCTTCAACTCTTCCAGAAAGGGTGTTGGAGGACGTTCTTCATGTGGCTCTGGCAAAGGCAAAAGCCTTCAGTGCCCTCTTAAGTATGGCTTTTGCTTAGTTCAAGGGACACAAGACCACCCAATGGAGGACTTTCACGTTGCGAAAATTGTCCAGTTCAACGGCCGCGAGTTGGGACTTTTTGCTATATTTGATGGACACTTGGGTGACACTGTGCCTGCCTATTTACAAAAACATCTCTTTTCTAATATCTTGAAGGAAGAGAACTTTTGGACTGATCCAAACAGTTCGATCATCGAAGCTTATGAGGCAACAGATCAGGCCATTCTCTCTCACAATCCTGATTTGGGGCGAGGAGGATCGACTGCAGTGACAGCCATTCTTATAAATAATCAGAAGTTATGGATAGCAAATGTTGGAGATTCACGGGCTGTTCTTTCGAGGAAAGGTGTCGCTATACAAATGAGTATTGATCATGAGCCTAATACTGAAAGACGCATCATCGAGGATAAAGGCGGCTTTGTCTCAAACCTTCCAGGAGATGTTGCTAGAGTGAATGGACAGCTTGCAGTTGCTCGTGCATTCGGAGACAGAAACCTTAAGTCACACTTGCGATCTGATCCAGACGTACAACCTGATGATATCGATCAAGATACTGATCTCTTGATACTTGCTAGTGATGGTTTATGGAAGGTAATGGCAAACCAAGAAGCAGTTGATATTGCCATAAAGATAAAAGATCCACAAAAGGCAGCTAAGCAACTAATTGCAGAAGCATTGAAAAGAGAGAGTAGAGATGACATTTCCTGCATCGTTGTTCGATTCAAAGATCGAAACCCTAAAGTCACAACAAGAGAGAACCCTCTCTCAACCTCCTTCCATCCCTCCTCCAACTTCCATTGCCGCGCCGCCGGCATCATCCTCCGTTCACCCCTCTCATTATTTCTCCGTTCACAGatggaGATAGAAGGCGAGAAGATGTTCGAGGTGGACCTCGGTAACCTAATGGCCTATGACTCTCATTACACCATCCCTTCTCAACAATCCAGGGAGGAACTGGTAAAGGAGTGTTTACAGAAAGGCACTGAGTTAGTTCAAGCTATCGCAGATTCTCTCTTTACTTTGCCCTCAACTGAAGATGTAGATGGACCCCTTGTTAAATTGCCTCCACCAACCACCAAATTACCTAGAGAAAAACACATGCCAAGGCCAAGACCTCCTACTAAATGGGAAGAATTTGCTAAAAAGAAAGGAATTATTAAACGGAAGAAAGACAAAGTTGTTTTTGATGAACAATCTGAAACATGGAAACGCAGACATGGCTATGATCATGCCAATGACGAAGAGGCCATACCTATTATTGAGGCTAAACCAACTGATGATCCAGATGAGGATCCTTTTGCCAAAAGAAGGCAAGACAAAAAGGGAAGAGTCGATAAACAGGAGAAAAATCGGCTACAGAACTTGAAAAATGCTGCAAAGTTTGGGGATTTACCTAGCCATGTTCAACTGGCTGCTACTTCCTTGCCCATAACAGGAACTCAGGCAGTGCAGAAGAAGGTTACCAAAGATGAATTAGGTAATGTAGCAGGAATTGCTTCAACTGCTACTGCTAGCGGTGGGAAATTTGACAAGAAATTGCCAGGTGAAAAGCCTCCCAAACATAAAGGAAAATTCCGAAAGTTCCCGCCGGTAGCACCTCCAGCAGCAAACGGAAAAGTGACGGGCCCATCGGAGAGGGAGCAAACTGAAAAAATATTGAACAAGATCTTGTCCAAGAATAACCACGATATACTCAATGTTAACAAGGCTGTCACAGTGCACAAtgtgaagaaagagaaaaaccGAAGGAGTGATAAATCGAAATCTTCAGCAACCGACAAAAAACTGAAACCTCAGAAGAAGCCGTTTAAAAAGGGGGGAAGTGCAAAGAAAGGCAACCCAAAAGCACATTTTGCCGCTTCAAGAGACTGGTTATACCGTCACTCATTCACCGTCGCCGGTCTCCGGTCGGTGGTGACTGATCTCGGTGACGGAACCACCATGCATTGTTGGATACCAAAATTACATAACCCATGTAAACCATCACTTGTTCTTGTTCATGGTTTTGGCGCCAATGCAATGTGGCAATATGGTGAATATCTTCGTCATTTTATCACAcactttaatttatatgttcCTGATCTTCTTTTCTTTGGTGGATCTTTTACTTCAAGGCCAGAGAGGACTGAATCTTTTCAAGCTTTGTGTTTGATGAAGCTTATGGAGGCTCATGGTGTTAATAGATTGAGCTTGGTTGGGATAAGCTATGGTGGTTTTGTAGGGTATAGTTTGGCTGCTCAGTTTCCTGAGGTGATTGAGAAGTTGGTTTTGTGTTGTGCTGGTGTTTGTTTGGAGGAAACTGATATGAAAAATGGGTTGTTTAAGGTTTCTAGTTTGGAGGAAGCTTCTAGTATTTTGTTACCTCAAACTCCTGATAAGCTTAGGGAATTGATGAGGTTGTCTTTTGTTAGGCCTGCTAGGGTTGTTCCTTCTTGGTTCCTTGAAGATTTCATTCATGTAATGTGCACAGATCACATTGAGCAGAAGAGAGAGTTGCTTGAGGCAATACTAAAAGGTAGACAACTTTCCAACCTTCCAAAAATCAATAAGCAGCCTACTCTAATCATGTGGGGAGAGCAAGATCAGGTATTCCCTCTGGAATTAGGCTACAGATTAAAAAGGCATATAGGTGAAAATACTCAAATGGTGATCATCAAGAATGCAGGACATGCATTGAACATTGAAAAGCCTAAAGAGTTTGCTAAGCACTTGAAATCATTCCTCATCAATGGAGACTCGCACCCTTCCTCGCCACCTTCTTTGAAAGAGCAAATCCAGAAGACATTTTCGTTGGATTTCATTAGGTATTGGTCAGGCTGGGGTGCTTTGGCATGGGGTGTTGCTCTATTATTATTGGAGCCGATATTCCAAACCAAATTGTTTGTAATGCTTCTCATCATCTTTCTTCTAAATTTCTCTCTTTGTTTCCTCTTTCTTCATAGTACTTAG 3066 0.422 MDSLCCFNSSRKGVGGRSSCGSGKGKSLQCPLKYGFCLVQGTQDHPMEDFHVAKIVQFNGRELGLFAIFDGHLGDTVPAYLQKHLFSNILKEENFWTDPNSSIIEAYEATDQAILSHNPDLGRGGSTAVTAILINNQKLWIANVGDSRAVLSRKGVAIQMSIDHEPNTERRIIEDKGGFVSNLPGDVARVNGQLAVARAFGDRNLKSHLRSDPDVQPDDIDQDTDLLILASDGLWKVMANQEAVDIAIKIKDPQKAAKQLIAEALKRESRDDISCIVVRFKDRNPKVTTRENPLSTSFHPSSNFHCRAAGIILRSPLSLFLRSQMEIEGEKMFEVDLGNLMAYDSHYTIPSQQSREELVKECLQKGTELVQAIADSLFTLPSTEDVDGPLVKLPPPTTKLPREKHMPRPRPPTKWEEFAKKKGIIKRKKDKVVFDEQSETWKRRHGYDHANDEEAIPIIEAKPTDDPDEDPFAKRRQDKKGRVDKQEKNRLQNLKNAAKFGDLPSHVQLAATSLPITGTQAVQKKVTKDELGNVAGIASTATASGGKFDKKLPGEKPPKHKGKFRKFPPVAPPAANGKVTGPSEREQTEKILNKILSKNNHDILNVNKAVTVHNVKKEKNRRSDKSKSSATDKKLKPQKKPFKKGGSAKKGNPKAHFAASRDWLYRHSFTVAGLRSVVTDLGDGTTMHCWIPKLHNPCKPSLVLVHGFGANAMWQYGEYLRHFITHFNLYVPDLLFFGGSFTSRPERTESFQALCLMKLMEAHGVNRLSLVGISYGGFVGYSLAAQFPEVIEKLVLCCAGVCLEETDMKNGLFKVSSLEEASSILLPQTPDKLRELMRLSFVRPARVVPSWFLEDFIHVMCTDHIEQKRELLEAILKGRQLSNLPKINKQPTLIMWGEQDQVFPLELGYRLKRHIGENTQMVIIKNAGHALNIEKPKEFAKHLKSFLINGDSHPSSPPSLKEQIQKTFSLDFIRYWSGWGALAWGVALLLLEPIFQTKLFVMLLIIFLLNFSLCFLFLHST 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 612 636 - -
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 398 414 - -
Tsu08g04316 1021 Pfam Ribosome biogenesis regulatory protein (RRS1) 333 494 IPR007023 GO:0005634|GO:0042254
Tsu08g04316 1021 PANTHER PROTEIN PHOSPHATASE 2C 1 281 IPR015655 GO:0004722|GO:0006470
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 608 654 - -
Tsu08g04316 1021 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Tsu08g04316 1021 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 1 281 - -
Tsu08g04316 1021 SMART PP2C_4 21 278 IPR001932 -
Tsu08g04316 1021 Gene3D alpha/beta hydrolase 672 949 IPR029058 -
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 388 414 - -
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 443 488 - -
Tsu08g04316 1021 SUPERFAMILY PP2C-like 29 282 IPR036457 -
Tsu08g04316 1021 Pfam alpha/beta hydrolase fold 700 936 IPR000073 -
Tsu08g04316 1021 Pfam Protein phosphatase 2C 43 273 IPR001932 -
Tsu08g04316 1021 PRINTS Alpha/beta hydrolase fold signature 726 741 IPR000073 -
Tsu08g04316 1021 PRINTS Alpha/beta hydrolase fold signature 770 783 IPR000073 -
Tsu08g04316 1021 PRINTS Alpha/beta hydrolase fold signature 784 797 IPR000073 -
Tsu08g04316 1021 PRINTS Alpha/beta hydrolase fold signature 892 906 IPR000073 -
Tsu08g04316 1021 SUPERFAMILY alpha/beta-Hydrolases 675 947 IPR029058 -
Tsu08g04316 1021 CDD PP2Cc 33 280 IPR001932 -
Tsu08g04316 1021 Gene3D - 29 290 IPR036457 -
Tsu08g04316 1021 SMART PP2C_SIG_2 44 280 IPR001932 -
Tsu08g04316 1021 MobiDBLite consensus disorder prediction 546 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04316 Tsu-Chr8 61115380 61127957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04316 1 281 PP2C-type Phosphatase Gene Family AT1G22280 66.899 2.56e-128 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04316 - - aprc:113852029 568.155