Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu08g04315 | ATGGCGGAGCGTCCTTCTTACGGATTAGGTCCTCGATTAGATATTCAACAATTACAATTTGAAGCCCAGCATCGGTGGTTGCGACCTGCAGAAATCTGTGAAATTCTTCGTAATTATCGACTATTTCATATCACATCAGAACCTCATATAAGGCCACCAAGCGGgtcactttttctttttgaccgGAAGGTTTTGAGATACTTTAGAAAGGATGGACATAActggagaaagaaaaaagatggaaaaactGTGAAAGAAGCTCATGAAAAATTAAAGGTCGGAAGTGTTGATGCGTTACATTGCTACTACGCACAtggagaagaaaatgaaaattttcaaagGCGAAGCTATTGGTTGCTTGAACAGGATACACACATAGTATTTGTCCACTACTTGGAAGTTaagGGTAACAAGTCAAATATTGGAGGAAGCCCCGATAGCGATGGGGTCATATCAGACTCCCAAAAGGTCAACTCTCCGTCGTCTGGTTTTCCCACAACTTATAGTGGTGTGCCTTCACTGAGTACAGATTCCATGAGCCCAACTAGCAGCTTGACATCTTTACGTGAAGATGCTGATTCGGGTGATCATGGACAGTCGTCGGTTTCTGGAACGGATTATATCCCACTTTTTGACAGGGATAAATTTAGAGGAAATGATGCTAATTGTATTGATGGCCTGAAAGCACATGGCTTGGCATCATGGGACACAGTCTTGCAATGCACTGCTGAGTTGAATGCGGATCCTTCTCTTGCATCTTTCCCTTCCTTCCCATCTAGTTCACTGGCAAACATCCATGACCAAGAACAAAACACCTTGGGTGACTTTTCAATGAGCAGAAGTGGAGCAGGGGGCTCTCAGCATCTCCAACCAAATTGGCAGATTCCTTTTGAAGACAACACAGGGCACATGCCAACTTTAACTCAATCATTGAGTTTGGAATTTGGATCTGATTATGGCACTGGTTTACTAGGGAATGAAGCTCATAATGAAAATTCTGAAATTGATCCTATCATGTTTAGTTTTCATGGTGAGCCAACAGAGAAGCTTGCACATCAAAACTATTTGGGCGTGATGGTAGATGGACTCCCACAAGTTGACCTTAAGTCCAATTCCGCAAATGAAGTTCCTAGTGAAGAAACTATTAACTATCCCTTATCTGTGAGGCGCACATTATTGGATAGGGATGAGAGCTTGAGGAAGGTTGATAGCTTCAATCGATGGATTACTAAAGCACTTGGAGAGGTGGATAATTTGAATATGCAGTCCTCACCTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTGATAGATGAAACCTCACTGAGCCCATCTCTGTCTCAGGACCAACTGTATAGCATAAATGATTTTTCACCCAAATGGGCTGATGTAGAGTCAGACACTGAGGTGTTGATTATTGGATCATTTTTGAAAAGTCAACCAGATGTTACAACCTATAATTGGTCCTGTATGTTTGGGGAAGTTGAAGTTCCTGCTGAGGTTGTAGCTAATGGAATTTTGTGCTGTCAAGCTCCTCCTCATAAGGTTGGACGGGTTCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGCGAGGTGCGTGAATTTGATTTCAGAGAGGGATATTCTAGAAATGTAGATTATACAGAGTTTTTTGACAGTTCGAATGAAATGCTGTTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAACCAGTGCACCCTTCAAATCAAACCTTTGAGGGTGATACAGAGAAAAGAAACTTAATTCTTAAGCTTATTTCActgagagaggaagaagaatatTCAATCAAGGAAGAGCGGGCTGTAGAGATGGATGTATCACGACACAGGGTGAAGAAGCATCTGTTTCACAGACAGGTTAAATTGAACCTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCGAATGTGTTAGATAAGGATGGGCAGGGCGTTCTACATTTAGCAGCTGTTCTTGATTATGACTGGGCAATCACCCCAATTTTAATTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGGATGGACGGCTTTACATTGGGCGGCATCCTGTGGCAGAGAGCGGACAGTTGCTGCCCTTGTATCCATGGGTGCAGATTGTGGAGCATTGACGGATCCATCTCCAGAATTTCCTTCAGGTAGAACAGCTGCAGATCTCGCATCTAGCAATGGGCACAAAGGACTCTCTGGTTTTCTTGCAGAGTCTTCATTAACCAGCCACCTTGAAGCCCTCACAGTGGATGATCAACAAAAAGGTGGTCTACAAGAAGTTTTAGGAACGAAAGCAGTGCAGACAGTTTCGGAGCGAACTGCAACACCTGTCTATAGTGATATGCCTGATGCCCTCTGCCTTAAGGATTCTCTAACTGCTGTCCGTAATGCTACACAAGCTGCTGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAGAGGAAGCAGTTAACTCAGGACGAGGATGATGAGTTTGGTTTGTTAGATCAGCGGGCTCTTTCCCTACTAGCTTCTAAGGCATCCAAGTCAAGACAAGGAGATGGCATAGTCAATGATGCTGCAACTCAGATACAGAAAAAGTTCCGTGGTtggaagaagagaaaagaatTCTTGATCATCCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTGTCATCTGGTCCGTGGGAATCCTGGAGAAGATTATATTACGATGGAGACGCAAGGGTAGTGGTCTACGTGGCTTTCGACCAGAAACCCTTAATAAAGCCCCCAGTCAACAAAATGATTCTCCGAAAGAGGATGATTATGATTATCTAAAGGAAGGACGAAAACAAAAAGAGGAAAAGATCGAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCGGAGGCACGCGCTCAATACCGGCGTGTACTAAATGTTGTTGAAGACTTCCGTCAAAAGAAGGATTGTAATATGGGTTTAATCAGTTCTGAAGAGACAGTTGATGGTGTGGAGGATTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCAATGCCATAGCATTTGATTCTCTGTAG | 3126 | 0.4143 | MAERPSYGLGPRLDIQQLQFEAQHRWLRPAEICEILRNYRLFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEVKGNKSNIGGSPDSDGVISDSQKVNSPSSGFPTTYSGVPSLSTDSMSPTSSLTSLREDADSGDHGQSSVSGTDYIPLFDRDKFRGNDANCIDGLKAHGLASWDTVLQCTAELNADPSLASFPSFPSSSLANIHDQEQNTLGDFSMSRSGAGGSQHLQPNWQIPFEDNTGHMPTLTQSLSLEFGSDYGTGLLGNEAHNENSEIDPIMFSFHGEPTEKLAHQNYLGVMVDGLPQVDLKSNSANEVPSEETINYPLSVRRTLLDRDESLRKVDSFNRWITKALGEVDNLNMQSSPGISWSTDECGHVIDETSLSPSLSQDQLYSINDFSPKWADVESDTEVLIIGSFLKSQPDVTTYNWSCMFGEVEVPAEVVANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDFREGYSRNVDYTEFFDSSNEMLFHLRLEEFLSLKPVHPSNQTFEGDTEKRNLILKLISLREEEEYSIKEERAVEMDVSRHRVKKHLFHRQVKLNLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLDYDWAITPILIAGVNINFRDVNGWTALHWAASCGRERTVAALVSMGADCGALTDPSPEFPSGRTAADLASSNGHKGLSGFLAESSLTSHLEALTVDDQQKGGLQEVLGTKAVQTVSERTATPVYSDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQDEDDEFGLLDQRALSLLASKASKSRQGDGIVNDAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKIILRWRRKGSGLRGFRPETLNKAPSQQNDSPKEDDYDYLKEGRKQKEEKIEKALSRVKSMVQYPEARAQYRRVLNVVEDFRQKKDCNMGLISSEETVDGVEDLIDIDMLLDDDNFNAIAFDSL | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu08g04315 | 1041 | SMART | ANK_2a | 727 | 756 | IPR002110 | GO:0005515 | |
| Tsu08g04315 | 1041 | SMART | ANK_2a | 688 | 717 | IPR002110 | GO:0005515 | |
| Tsu08g04315 | 1041 | ProSiteProfiles | Ankyrin repeat profile. | 688 | 720 | IPR002110 | GO:0005515 | |
| Tsu08g04315 | 1041 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 860 | 913 | IPR027417 | - | |
| Tsu08g04315 | 1041 | SMART | iq_5 | 862 | 884 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | SMART | iq_5 | 885 | 907 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 194 | 1039 | - | - | |
| Tsu08g04315 | 1041 | SUPERFAMILY | Ankyrin repeat | 642 | 749 | IPR036770 | - | |
| Tsu08g04315 | 1041 | Pfam | IQ calmodulin-binding motif | 888 | 907 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | Pfam | IQ calmodulin-binding motif | 865 | 883 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 | 1 | 201 | - | - | |
| Tsu08g04315 | 1041 | Gene3D | - | 863 | 909 | - | - | |
| Tsu08g04315 | 1041 | MobiDBLite | consensus disorder prediction | 933 | 953 | - | - | |
| Tsu08g04315 | 1041 | Gene3D | - | 618 | 751 | IPR036770 | - | |
| Tsu08g04315 | 1041 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 194 | 1039 | - | - | |
| Tsu08g04315 | 1041 | Pfam | Ankyrin repeats (3 copies) | 636 | 716 | IPR002110 | GO:0005515 | |
| Tsu08g04315 | 1041 | ProSiteProfiles | IQ motif profile. | 886 | 910 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | SUPERFAMILY | E set domains | 455 | 540 | IPR014756 | - | |
| Tsu08g04315 | 1041 | MobiDBLite | consensus disorder prediction | 143 | 205 | - | - | |
| Tsu08g04315 | 1041 | SMART | CG_1_2 | 18 | 135 | IPR005559 | GO:0003677 | |
| Tsu08g04315 | 1041 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 1 | 201 | - | - | |
| Tsu08g04315 | 1041 | MobiDBLite | consensus disorder prediction | 143 | 189 | - | - | |
| Tsu08g04315 | 1041 | Gene3D | Immunoglobulins | 448 | 544 | IPR013783 | - | |
| Tsu08g04315 | 1041 | ProSiteProfiles | Ankyrin repeat region circular profile. | 688 | 714 | - | - | |
| Tsu08g04315 | 1041 | ProSiteProfiles | IQ motif profile. | 864 | 892 | IPR000048 | GO:0005515 | |
| Tsu08g04315 | 1041 | Pfam | IPT/TIG domain | 455 | 529 | IPR002909 | - | |
| Tsu08g04315 | 1041 | Pfam | CG-1 domain | 21 | 133 | IPR005559 | GO:0003677 | |
| Tsu08g04315 | 1041 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 15 | 140 | IPR005559 | GO:0003677 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu08g04315 | Tsu-Chr8 | 61102516 | 61112655 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu08g04315 | 1 | 1000 | CAMTA Transcription Factor Family | AT5G64220 | 52.818 | 0.0 | 1036 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | CAMTA | Tsu08g04315 | CG-1 | 1.7e-50 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu08g04315 | K21596 | - | gmx:100818124 | 1570.06 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Tsu02g01592 | 02 | 13986454 | 13994163 | Tsu08g04315 | 08 | 61102516 | 61112655 | PCT |