Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04307 atgaaggaagaagaagaatcaacGGTCAAAATGGAATGGTTAACTTCCATTGATTCAACAACTCTCTCTCACTCTGAACTTCAagcactttctctctcttctctctcttctttcgaCCTAAAATCTACGCGCGAAATCGTTACTCCCAAAATCGATCCCTCAACTTTCAACCACAGTGCCGGTTCTCACCGTCAAACCTACTCCCGATCTCACCGTCGTTGTCGTGCACCGCCACTTCTTCCAACTCCTGTTCTTCCCTCCGATCACCGTATCATCGTTGATTACCTCAAACAGTTTATTAGAGAAGATCCGAAGTTCGATCAGGTTGAGCTTCTTCAGCCTGTAATTCCTTCAATTTCACCGCCGGTGATATTTTCCGGTGAGGTGAGGAAAAGGAAGAGAGGGAGGAAACCTAAAATGAAGGTGCATTTAGATGACTGTTATAGAGGGATGGAGATTGTGAATAAAAATGGTGTTGCTGTTGATTTGAATGTGTTGTCGATGGTTGAGCATCCGTTTGCGGTGGAGATTGCGAGAAGGACGGAAGGGTTGAGTAATGAGGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAGTGGGGAAGTAGAAGAAGGAAGAGAAGGATTGTTGATGCTGCTGATTTTGGAGATGTGTTGCCTCTTGGTTGGAAGCTTTTGCTTAGTTTGAAGAGGAAAGATGGTCGTGCTTGGATCTATTGCCGGAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCGTTTAGGTCACTCTGATTTACAGTTACAAATCAGTCATAGGAGTGAAAACATACTTCAAGAACAGACAGTGACTACTGAAAATTCTGCAGGTGTTGCTCAAGAGGAGCAGGATCAACGGCAGATTGTTGCCACTAACTCGGATGTCTCTGGTTTCTCCGTCTCTAATGAACGATTGAAGGAAATGTCCTTGTTGGAGATGGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGCATACTTGGAGCACCTGTTGTCTATTCATCAGAAGACGACGAGGCGGTATCGACTTGGTTCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAGCGTCGCTACAATAGTCATGTTGGGATACATGTTAGGAATTATTTGAGGAAAGCTGAAGATTTGCCAGGTCAGCCTAATGTCTTGAGAGCAGAAGAGTCTCCAGTCACAGATGAGATGCCTTCAAGGATCTCTAAGATGGATGCCCTCGTTGAAATTGCTCAAAACTCTATTGTGGAGGATTCTGTCATGGAACCATGTTCCTCTAAACTGAATACGATTCATGTTTCAGAAATTGCGGCTGGTGACTTAGTTGAAAACATAAACGTTGAGTCTCCGATAAGTGAACAGCAAATGGAAGAGAGCTTGATTGGCCCAAATGTAGTTTGCGATTTAAATCAGCAAGGTAGTCCTCGTTTACTCATGGGTGGAACAATAGAGGAAATTGACAACAATAACCTAGTTATTAATGCAAAGATGTCTAGTTTTCTAGATAACACAGACTTgttatatgtaaataataaaaatgttgaTGCATCTGATACTTCTAAAGGAAAAGGTGATGCAGTGCTGACTGTTGAGGGATTTGATCATTCTGGGATTGATCTGCAAGGAGTTTCTCAAAGCCCGTTGATTCCTTCATTTGGGAATCACATGAAACCTGGATATGAGAAGAGTGAAAATTCTGGTTGCACTAATACTAAGGGGGGTCTTAAACTTGACGAAAACAATAGTAATAAGAGTGACTTGAAAATTGGTTTAGATGGCTGCAAGGATGTATCCGGTGTTGCTAATGTTCACGTGACAGCAATGCCAACTTCTAAAGAAAATGTGATCCAATCTATGGTTTCTAACCCCTCTGTATCCCCAGAACAATCTATGGATTCTTTTTCTGCATTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTGGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGATGTGTCAACTGATTTGGCAAATAACATAGTGATGCAAGGGACATGTGCATCACAAGAAGTTATGTTAAATTTGGATGCCAATAATCAGCTCACAACCACGTGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCTGTGGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG 2373 0.4037 MKEEEESTVKMEWLTSIDSTTLSHSELQALSLSSLSSFDLKSTREIVTPKIDPSTFNHSAGSHRQTYSRSHRRCRAPPLLPTPVLPSDHRIIVDYLKQFIREDPKFDQVELLQPVIPSISPPVIFSGEVRKRKRGRKPKMKVHLDDCYRGMEIVNKNGVAVDLNVLSMVEHPFAVEIARRTEGLSNEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSRLGHSDLQLQISHRSENILQEQTVTTENSAGVAQEEQDQRQIVATNSDVSGFSVSNERLKEMSLLEMENLADVQIHDLFECHKCSMTFDEKDAYLEHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRKAEDLPGQPNVLRAEESPVTDEMPSRISKMDALVEIAQNSIVEDSVMEPCSSKLNTIHVSEIAAGDLVENINVESPISEQQMEESLIGPNVVCDLNQQGSPRLLMGGTIEEIDNNNLVINAKMSSFLDNTDLLYVNNKNVDASDTSKGKGDAVLTVEGFDHSGIDLQGVSQSPLIPSFGNHMKPGYEKSENSGCTNTKGGLKLDENNSNKSDLKIGLDGCKDVSGVANVHVTAMPTSKENVIQSMVSNPSVSPEQSMDSFSAFSSDKGFQELRLEDIGSLEYDFASVQDVSTDLANNIVMQGTCASQEVMLNLDANNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04307 790 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Tsu08g04307 790 Pfam Methyl-CpG binding domain 219 265 IPR001739 GO:0003677
Tsu08g04307 790 MobiDBLite consensus disorder prediction 51 72 - -
Tsu08g04307 790 Gene3D Classic Zinc Finger 286 417 - -
Tsu08g04307 790 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 371 IPR013087 -
Tsu08g04307 790 Gene3D - 217 283 - -
Tsu08g04307 790 SMART c2h2final6 390 412 IPR013087 -
Tsu08g04307 790 SMART c2h2final6 343 366 IPR013087 -
Tsu08g04307 790 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 779 IPR037472 -
Tsu08g04307 790 SUPERFAMILY DNA-binding domain 216 272 IPR016177 GO:0003677
Tsu08g04307 790 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Tsu08g04307 790 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
Tsu08g04307 790 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 210 282 IPR001739 GO:0003677
Tsu08g04307 790 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 6 779 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu08g04307 MBD 8.2e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04307 - - lang:109329666 914.835