LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g04300	ATGATGGCTACCGCCGATGATCCAGAATACTGGATGAAACTGATGGCCACTTACCTCTTCCGCCCTGAATCCGACCATTCCGATCAGCTCCGCTCCATTGCTTCTTCTCCTGATTGCAATCTTCATTTTCCTCTCTACGTCGACTTCGCTGAATTGTTGGATTATGATCCTCGCATTGCTCATCTCATCTTTTCCCAATCCAATACATACCTCCAACTATTCGATGAAGCTGCTCTTCGTGCTCATAGAGTCGTGTTAGGAGAAATGGCTGGTGATGACAAGAATATTGTGATTGAGAAAAAGTTCATTCATGTTCGAATTAACATCAGCGGTTCTCCCCTTGAATGCCCTGAGACTTTTCCGAGCATAGGACGTGTACGGGTGCAACACCGAGGGATTCTTCTCACTCTCAAAGGGATAGTAATCAGGTCTGGAGCTATCAAGATGCATGAAGGAGAGAGGAAGTACATGTGCCACAAATGCAAAAACAGCTTCACAGTTCATCCTGAGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCAGAAGCCGAAGCCCTGTGGGGGTACAAAATTCCAGTATGTAGAGAATACTATAGTGTGCCATGACTACCAGGAGATAAAAGTCCAAGAGAGCACACAGGTTCTAGGTGTTGGTGCGATTCCTCGTTCAATTCTTGTCATCTTGAAGGATGACCTTGTTGATGTTGTTAAAGCTGGagATGATGTGATTGTTACTGGTCTCTTAACAGCAAGATGGTCTCCAGAGTTGAAGGATGTGCGCTGTGACCTTGATCCGGTATTAATAGCCAACAATGTAAGGAGAATCAATGAATTGAAGTCAGAAATTGATATTTCTGATGCCATTGTTATGAAATTCAAGCAGTTTTGGGATCACTTCAAAGACACGCCTTTAAAAGGTGGAAGGAATGCTATTCTACGAGGAATCTGCCCACAAATATTTGGTCTTTTCACGGTCAAGCTGGCAGTTGCATTAACACTAATCGGAGGTGTACAACATGTCGATGCTTCTGGAACAAGGGTAAGGGGGGAGTCCCACTTACTCTTGGTCGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGGTCCGTTATTACAACTGGGTTGGGAAGCACAAGTGCAGGATTGACTGTTACTGCCGTGAAGGATGGGGGTGAGTGGATGTTGGAAGCTGGCGCCCTTGTCTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACCCTCAGTACCAAAACAACAGTATTTGGCGCCACAAATCCTAAGGGACATTATGATCCTGATCAACCTCTGTCTGTCAATACAACCCTCTCCGGTCCTTTGTTAAGCAGATTTGATATAGTCCTGGTGCTCTTGGATACAAAGAACCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTTCTGAGGCAGAACCAGATAGAACATCCAATGATGAAGATCTTGCAAATATCTGGCCACTTTCTACACTCAAGAGGTATATACactatttgaaagaaaaattcaGACCAGTCCTTACGAGAGAGGCTGAAACAGTTATATCCAGCTATTATCAACTTCAAAGGAAATCTTCGACTGATAATGCAGCTAGGACAACCGTCCGCATGCTTGAAAGTTTGATTCGCCTAGCTCAAGCTCATGCAAGGCTGATGTTCAGAAATGAGGTGACTCGGCTAGATGCCATCACAGCTATTTTATGCATAGAATCCTCCATGACTACCTCAGCTATTGTGGATTGCATTGGGAATGCTCTGCATTCCAATTTCACCGACAACCCTGATCAGGAATATGCAAAGCAAGAAAGGTTGATCCTAGAAAAATTGGGATGCAATGACAACTTTTCTGATATGAATAGGATGGAAGACTGA	2013	0.4352	MMATADDPEYWMKLMATYLFRPESDHSDQLRSIASSPDCNLHFPLYVDFAELLDYDPRIAHLIFSQSNTYLQLFDEAALRAHRVVLGEMAGDDKNIVIEKKFIHVRINISGSPLECPETFPSIGRVRVQHRGILLTLKGIVIRSGAIKMHEGERKYMCHKCKNSFTVHPEVEARNSISLPSICPIQKPKPCGGTKFQYVENTIVCHDYQEIKVQESTQVLGVGAIPRSILVILKDDLVDVVKAGDDVIVTGLLTARWSPELKDVRCDLDPVLIANNVRRINELKSEIDISDAIVMKFKQFWDHFKDTPLKGGRNAILRGICPQIFGLFTVKLAVALTLIGGVQHVDASGTRVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTKTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSEAEPDRTSNDEDLANIWPLSTLKRYIHYLKEKFRPVLTREAETVISSYYQLQRKSSTDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFTDNPDQEYAKQERLILEKLGCNDNFSDMNRMED	670

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g04300	670	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	322	629	IPR027417	-
	Tsu08g04300	670	Gene3D	-	286	625	IPR027417	-
	Tsu08g04300	670	Pfam	MCM P-loop domain	315	517	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	SMART	mcm	119	621	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	Gene3D	-	126	254	IPR012340	-
	Tsu08g04300	670	SMART	AAA_5	354	503	IPR003593	-
	Tsu08g04300	670	CDD	MCM9	315	619	-	-
	Tsu08g04300	670	Gene3D	-	150	206	-	-
	Tsu08g04300	670	Pfam	MCM AAA-lid domain	538	619	IPR041562	-
	Tsu08g04300	670	Pfam	MCM OB domain	126	254	IPR033762	-
	Tsu08g04300	670	SUPERFAMILY	Nucleic acid-binding proteins	42	262	IPR012340	-
	Tsu08g04300	670	PANTHER	DNA HELICASE MCM9	36	660	-	-
	Tsu08g04300	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	411	425	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	439	452	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	489	497	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	353	368	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	36	660	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Tsu08g04300	670	ProSiteProfiles	MCM family domain profile.	312	515	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g04300	Tsu-Chr8	60980500	60991721	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g04300	26	644	Core DNA Replication Machinery Family	AT2G14050	75.968	0.0	980

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g04300	K10738		-	gmx:100776255	1115.52