Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04296 ATGGTTGAAGCACTTTTTGGCGCCCCTCTCTCCAACTTCGAAATCCTTCAAAGCTTCGAAAGCTTATGCATGCATTGCGGCGAAAAcGGCACTAcaaattccttcatcacttcCATTCCTCACTTCAAAAAGATTTGGTTGTCCGCTTTCGATTGTCCTCATTGTTGCAACAAGAATAATGAAGTAATGTATGTTGACGAAATTCCAATGCGTTGTTGCTCTTACACCTTGAAGATCTCATCCGGCAATCCAGAGATGCTCAATAGACAAGTGGTAAAATCAGAACATGCTACCATTAAGATACCAGAGTTGGATTTTGAGATTCAATCAGAGGCTCGGCGTGGTAGCCTGTCAACGGTAGAAGGGATACTGATGCGAGCTGCTGATGAACTTCAAGAACGATGCAAGAATGTTGCTCCGGAGACAGCTAAAGCAATAGATCAATTTTTGGTGAAGTTGCGAGCCTGTGGCGCAGGAGAATCATCATTTACATTTGTTCTGGACGATCCTGCTGGAAATAGCTTTGTTGAAAACCCGTTTGCTCCGTCATCTGATCCGTCAATGACAATCAAGTTTTATGATCGAACTCCTGAAAAACAAGCATCATTGGGATATCAAGTTACACAAATTGGAGGAACTCCAGATGAAGCACTAGCAGGTGTTTCCAACCAAGTGAAGGGAGAACCACACGGGTCTGTAGGGGCAACAGCAGGTCACCGAGCCATTGCACAGAGTAATAGTGCAGAGATTGCAGAAGCCTTATTTCGATATAGTACACCAGAAGAGGTGATGACTTTCCCAACAACTTGTTATGCTGGTTGTGCCGGTGGATGTGAAACTCGAATGTTTGAAATTGATATTCCATACTTCAAAAAAGGAATCATTATGGCATTCACTTGCGATGTTTGTGGTTACCGAAACTCTGAGTTGAAAGCGGGTGGGGGATTTGCagagaaaggaaaaaagatGACTCTTCATGTGAAAAATGTTAACGACCTAAACCGTGATGTAATAAAGTCTGATACGGCTAGTGTACAAGTGCCTGAACTTGACTTGGAGTTGGCAAGTGGCACTTTAGGAGGAATTGTTACAACTGTTGaaggtttaattaaaaaaattagtgaaaGCCTTGAGAGGGTCCATGGGTTTACTTTTGGAGACAGTCTTGATGAACATAGTAGAAGCAAGTGGCTTGACTTCGGGGCCAGGCTGAACAAGCTTCTTAGCTTGGAAAAGCCTTGGACTTTAATTCTTGATGATGCATTGGCAAATTCTTTTATAGCACCTGCAACTGATGATCTAAAAGACGACAAACAATTAATGTTTGAGGAATATGAGAGGACATGGGAGCAAGATGAAGAATTAGGTCTCCATGATATGGACACATCTTCTGCCGATGCTGCTTATGAATCAGCAAATACTAGTAGCAGTGAGTAA 1437 0.4113 MVEALFGAPLSNFEILQSFESLCMHCGENGTTNSFITSIPHFKKIWLSAFDCPHCCNKNNEVMYVDEIPMRCCSYTLKISSGNPEMLNRQVVKSEHATIKIPELDFEIQSEARRGSLSTVEGILMRAADELQERCKNVAPETAKAIDQFLVKLRACGAGESSFTFVLDDPAGNSFVENPFAPSSDPSMTIKFYDRTPEKQASLGYQVTQIGGTPDEALAGVSNQVKGEPHGSVGATAGHRAIAQSNSAEIAEALFRYSTPEEVMTFPTTCYAGCAGGCETRMFEIDIPYFKKGIIMAFTCDVCGYRNSELKAGGGFAEKGKKMTLHVKNVNDLNRDVIKSDTASVQVPELDLELASGTLGGIVTTVEGLIKKISESLERVHGFTFGDSLDEHSRSKWLDFGARLNKLLSLEKPWTLILDDALANSFIAPATDDLKDDKQLMFEEYERTWEQDEELGLHDMDTSSADAAYESANTSSSE 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04296 478 MobiDBLite consensus disorder prediction 453 478 - -
Tsu08g04296 478 PANTHER ZPR1 ZINC-FINGER DOMAIN PROTEIN 12 475 - -
Tsu08g04296 478 Pfam ZPR1 zinc-finger domain 21 177 IPR004457 GO:0008270
Tsu08g04296 478 Pfam ZPR1 zinc-finger domain 273 427 IPR004457 GO:0008270
Tsu08g04296 478 Gene3D ZPR1, zinc finger domain 258 314 IPR042452 -
Tsu08g04296 478 Gene3D ZPR1, zinc finger domain 14 64 IPR042452 -
Tsu08g04296 478 PANTHER ZINC FINGER PROTEIN ZPR1 12 475 IPR040141 -
Tsu08g04296 478 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 273 461 IPR004457 GO:0008270
Tsu08g04296 478 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 23 201 IPR004457 GO:0008270
Tsu08g04296 478 Gene3D ZPR1, A/B domain 316 457 IPR042451 -
Tsu08g04296 478 Gene3D ZPR1, A/B domain 68 205 IPR042451 -
Tsu08g04296 478 SMART zpr1 21 178 IPR004457 GO:0008270
Tsu08g04296 478 SMART zpr1 268 429 IPR004457 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04296 Tsu-Chr8 60914165 60919340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04296 6 475 C2H2 Transcription Factor Family AT5G22480 66.245 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04296 K06874 - gmx:100798741 684.871