Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04294 ATGGGATTTCATAACAGAAAATTTCTCACAGAATTATGCGAATTAATATGTCATGGAAAAGAATCTCTATCAAATTGTTCATCAAACACCAAAGATTGCACCACCGTTTGTTTCAAAATCTGTCTTCCAAATCCTCAATACCCATTTTTCAATcatccaccaccaccatcaccacccCAAAAAGTTCCTTCTTTTATCATATCAGATGAAAACAACAACCACAAACTCACCAATTACTTCATCCTTACCCTTTCTCTTGTtgcttttgttttctttcttgtttgTATTCGTGCAATTTGTATCACTTTTAGGtcaagaagaacaagaagattaTTGGCAGTGACAAGAGCTTCACCTTCATCggcatcatcaacaacaacaattcaACAAATTGATGAGAATTTTGATGAAAATCAACATTTTGTGGATCATCCAATTTGGTATATTCGAACCCTAGGTCTTAATCAATCTGTTATAAATACAATTAGTGTTTGTAAGTATAAGAAAGGTGAAGGTTTGATTGATGGAACTGAATGTTCTGTTTGTTTGAGtgaatttgaagaagatgaaaatctTAGACTTTTACCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGGTCACATACCAATTGTCCTATGTGTAGAGCTCCAATTGTTAATAGTACCAACCCTCCAATTGGAAGGGTAGAGTCTTTGGAgtctgttgttgttgttgatgatttaaaTTCAAGTTCAAGTTCATTGGAACATACACAAATTGAggtttttgatgaaaatagtgGTGATGGTGAAACCAATTTAGGGTTTGAAAGTTGTGATTTTGATTCTGAATCGAGGAATAGGGCAGCGGCGGAAGAAGAAGGTGAAAGGCAATTGGGGGCATGTGAAAATGAAAGGCGAGTTGTCGATGCGGTTAGTGTTAGTCGGCCTAGGAGATCGGTATCTATGGATGATTCTTTTGTTGCGAATATCAATAATGCTCTTGCAAATGTTCTATCAATAGAAGAATCTAAAGGTAACAGTGAATCAAGTAGAGTGATTTGCAATGAAGATACTATTTCTAAGGTTAATGGAAATGAGAATTTGGCAACTACTTCCAAAGGTAGTAGTAGCTTTTCTTTTAGGTCAACAAGATATTTGCAGGGTATTCCTAGTCCAATGAAGAGATCGAGTTCATACAATGGGAAATTTCTTCTGTCTTGGTATAGCCGCAATCAGAAGAAGCCAAATGCTATTCTGagaagctga 1266 0.3104 MGFHNRKFLTELCELICHGKESLSNCSSNTKDCTTVCFKICLPNPQYPFFNHPPPPSPPQKVPSFIISDENNNHKLTNYFILTLSLVAFVFFLVCIRAICITFRSRRTRRLLAVTRASPSSASSTTTIQQIDENFDENQHFVDHPIWYIRTLGLNQSVINTISVCKYKKGEGLIDGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVNSTNPPIGRVESLESVVVVDDLNSSSSSLEHTQIEVFDENSGDGETNLGFESCDFDSESRNRAAAEEEGERQLGACENERRVVDAVSVSRPRRSVSMDDSFVANINNALANVLSIEESKGNSESSRVICNEDTISKVNGNENLATTSKGSSSFSFRSTRYLQGIPSPMKRSSSYNGKFLLSWYSRNQKKPNAILRS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04294 421 ProSiteProfiles Zinc finger RING-type profile. 179 221 IPR001841 -
Tsu08g04294 421 CDD RING-H2_PA-TM-RING 178 221 - -
Tsu08g04294 421 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 412 IPR044675 -
Tsu08g04294 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 229 IPR013083 -
Tsu08g04294 421 SMART ring_2 179 220 IPR001841 -
Tsu08g04294 421 Pfam Ring finger domain 178 221 IPR001841 -
Tsu08g04294 421 SUPERFAMILY RING/U-box 173 228 - -
Tsu08g04294 421 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04294 Tsu-Chr8 60898800 60900452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04294 141 244 C3H Transcription Factor Family AT4G33565 65.385 2.50e-44 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04294 - - lja:Lj6g3v2193690.1 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04294 08 60898800 60900452 Tsu08g04294 08 60898800 60900452 ECH