Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04272 ATGGTTTTTCACTCAAAACTGCTGTTGTTGCTGGTGATTGTTACGGTATTTTTATCGAAAGTAGCGTCTCAGTTACTATCTCTGCCAAACTGCCCAACAAAGTGTGGCTCTGTCACCATTCCCTTCCCATTTGGAACCACTAAGGATTGTTCCTTGGACAACACGTTTCTCATCAATTGCAACAAAACATCTACATCTACAACCTCAACACATGTACCCTACTTGCCACAAAGTAATCAAAGTGTCCTAAACATCTCACTCGACGGTGAACTGCATGTTGCATGGCCAGTAGCCAGAGATTGCTACGATGAAAAGAGCAAACTTGTGAACTGGGCATATAGGACTATCAACACAACACATTTCCACATCTCGTCAACTCGAAACAAATTTATCGCAGTTGGCTGTGACACCACTGGAGCACTCGTAACATATGATTCTAGAGGAAACAACTACACCACAGGATGTGTCGCTCTGTGCAACAGGCTTAATGATATTGTGGCCAATGAATCTTGCTCCGGCACTGGTTGTTGCGAGATTCCAATACCCCAAGGTCATGTGTTAACGAAAGTAATCTATGTTTCTGGAGGTGTATTCAACAATCACTCAGCAGTGCATGACTTCAATCCATGTGGTTATGCTTTTTTGGTTGAAATTGGAGCCTACAAGTTTGAATCCACAGACCTCCTCAAGTTGGAGAAGGAGAAGTTTCCTGTGATGTTTGACTGGGCAGTAGGGAACCAAACGTGCCAGCAAGCTCAGAAGAATCTTTCAAATTATGCCTGTAAGGACAACAAAAGTACATGTTACAACTCAACCGAGAGATCTGGTTACCTTTGCAGATGCTTTCATGGATACCGGGGAAATCCTTACCTCATTCATGGTTGCCAAgATATTAATGAATGCAAGGAGTCCAATGACTGTGTTGAGGAGGCAACATGCATCAATCTTCCTGGAAGCTACCATTGTTTATGTCCAGAAGAATATGAGGGAAACGGGAAGAAGAGTGGAACAAGATGCAGCCCAAAATCCAGTACCAAGTCAAGGAAAGAGATCATATTGATCATTGCATTGAGTGTCAGTGCAAGCCTCGTAGTACTAGTGGCAGGAAGCTTTTATGCGTATTTGGCAATGAAGAAAAGAAAGCTCATTAAACTTAAAGAACAATTTTTTCAACGAAATGGTGGCTTACTGTTACAACAACAACTAGTGAGGCGTGGAGGGTCAACTGACACAGCTAAAGTCTTCACCGTTGAGGAGCTAAATGAAGCAACCAACAACTTTGACGAAGGCAAGATTCTAGGCCAAGGTGGTCAGGGAACAGTTTACAGAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATCAGTGACCTAAAACAGATTGAGCCGTTCATCAATGAAGTGATCGTGCTTTCCCAAATCAACCATAGAAATGTAGTAAAGCTTTTAGGTTGTTGTTTGGAGACGGAAGTTCCCTTACTTGTTTATGAATTCATTTCAAACGGTACTGTTTATGAGCATCTTCATGATCAAAACCAAACTTTAAAGCTTACATGGAAAACAAGATTGAGAATAGCAAAAGAAACTGCTGGAGTCCTCGCATACTTGCATTCTGCTGCATCTACACCAATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTGTTCCTCTTGATCATAGTCAGATAACCACTCTAGTGCAGGGGACATTTGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTAACAGAGAAGAGTGACGTCTATAGCTTTGGGGTTGTCCTAGCGGAGCTACTGACGGGAAAGAAGGCACTGTCTTTTAGCAGGCCAGAGGAAGACAGAAACCTTGCATTGTACTTTGTTTCTTCAATGAAAGAGGGTCGATTACAACATGTTTTGGACAAAAGTATAGATGGGACGAATATTGAGCAACTAAAGGAAGTTGCCCATATTGCAGAAAGGTGTTTAAGGGTGAAAGGTGAGGAAAGACCCACCATGACAGAAGTAGCAATGGAACTGGAGGGAATATTAGTTTATGAAGATCACGGTTTGGGAAGTCGCAATTTGTCTTCAGAAGAGACTGATTACTTGCTAAGAGCAGCGTCGTCGTTTATCAATGTTGAAGACGGCGTTTATGGAAGTGACACTAATTGTTCTGACTCGTATAGCATAAACCAGATGTCGATGTCAACGTTTGGTGGTagataa 2277 0.4163 MVFHSKLLLLLVIVTVFLSKVASQLLSLPNCPTKCGSVTIPFPFGTTKDCSLDNTFLINCNKTSTSTTSTHVPYLPQSNQSVLNISLDGELHVAWPVARDCYDEKSKLVNWAYRTINTTHFHISSTRNKFIAVGCDTTGALVTYDSRGNNYTTGCVALCNRLNDIVANESCSGTGCCEIPIPQGHVLTKVIYVSGGVFNNHSAVHDFNPCGYAFLVEIGAYKFESTDLLKLEKEKFPVMFDWAVGNQTCQQAQKNLSNYACKDNKSTCYNSTERSGYLCRCFHGYRGNPYLIHGCQDINECKESNDCVEEATCINLPGSYHCLCPEEYEGNGKKSGTRCSPKSSTKSRKEIILIIALSVSASLVVLVAGSFYAYLAMKKRKLIKLKEQFFQRNGGLLLQQQLVRRGGSTDTAKVFTVEELNEATNNFDEGKILGQGGQGTVYRGVLQDKRIVAIKKSKISDLKQIEPFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQTLKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQITTLVQGTFGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEEDRNLALYFVSSMKEGRLQHVLDKSIDGTNIEQLKEVAHIAERCLRVKGEERPTMTEVAMELEGILVYEDHGLGSRNLSSEETDYLLRAASSFINVEDGVYGSDTNCSDSYSINQMSMSTFGGR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04272 758 SMART egfca_6 297 340 IPR001881 GO:0005509
Tsu08g04272 758 SMART egfca_6 253 296 IPR001881 GO:0005509
Tsu08g04272 758 Pfam Protein kinase domain 428 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04272 758 ProSiteProfiles EGF-like domain profile. 297 340 IPR000742 -
Tsu08g04272 758 Gene3D Laminin 246 339 - -
Tsu08g04272 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 17 732 - -
Tsu08g04272 758 ProSitePatterns Calcium-binding EGF-like domain signature. 297 322 IPR018097 GO:0005509
Tsu08g04272 758 SMART egf_5 248 296 IPR000742 -
Tsu08g04272 758 SMART egf_5 300 340 IPR000742 -
Tsu08g04272 758 Pfam Wall-associated receptor kinase galacturonan-binding 31 89 IPR025287 GO:0030247
Tsu08g04272 758 ProSiteProfiles Protein kinase domain profile. 427 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04272 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 732 IPR045274 GO:0007166
Tsu08g04272 758 CDD EGF_CA 297 330 - -
Tsu08g04272 758 CDD STKc_IRAK 433 699 - -
Tsu08g04272 758 SUPERFAMILY Protein kinase-like (PK-like) 410 697 IPR011009 -
Tsu08g04272 758 Gene3D Transferase(Phosphotransferase) domain 1 503 711 - -
Tsu08g04272 758 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 313 324 IPR000152 -
Tsu08g04272 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Tsu08g04272 758 Gene3D Phosphorylase Kinase; domain 1 397 502 - -
Tsu08g04272 758 SMART serkin_6 427 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g04272 758 SUPERFAMILY Growth factor receptor domain 244 329 IPR009030 -
Tsu08g04272 758 Pfam Calcium-binding EGF domain 297 339 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04272 Tsu-Chr8 60702895 60705625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04272 1 701 Receptor kinase-like Gene Family AT1G21230 46.554 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu08g04272 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04272 - - mtr:MTR_3g088780 996.497