Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04268 ATGGCAACTTCTCATTTTTCAACACAACCTTATCCCCTGAGGGTTCCAAATCTCATTGGAGGCAAGTTTGTTGAGTCAAAGTCATTGACTTTTATAGATGTTATAAACCCTGCAACACAAGAGGTTGTTTCACAAGTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATATCCGTCATGGCGTAACACTCCAATCACAAAACGCCAACGTGTTATGTTGAAGTTCCAGGAGCTTATTCGCAGAGATATGGATAAACTTGCTCTGAATGTGACAACTGAACAAGGAAAGACGTTGAAGGATGCGCAAGGAGATGTATTCCGTGGTTTAGAGGTGGTGGAACATGCTTGTGGGATGGCAACACTACAGATGGGAGAGTATGTTTCCAATGTATCAAATGGAATTGATACTTTCAGCATCAGAGAACCACTCGGTGTTTGTGCCGGCATCTGTCCTTTTAACTTCCCTGCAATGATTCCTCTCTGGATGTTCCCAGTGGCAGTTACCTGTGGCAATACTTTTATCCTAAAACCGTCAGAGAAAGATCCAGgTGCTTCTATGCTTCTTGCACAATTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCACGGAGCTCATGATACTGTGGATGCTATTTGTGATCATGATGACATCAAAGCTATATCTTTTGTTGGTTCAAATGTTGCGGGAATGCACATATATGCAAGAGCAACAGCTAAAGGGAAGCGTGTTCAGTCTAATATGGGGGCCAAAAATCACGCGGTTGTCATGCCGGATGCAAGTGTTGATGCAACTATCAATGCTTTAATTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTCTAAGCACAGTTGTTTTTGTTGGAGGCTCAAAACCATGGGAAAGTATACTTGTGGAGCGTGCTAAAGCTCTTAAAGTAAACGCTGGAACTGAACCCGATACGGACCTTGGACCAGTCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCAAGACTATTGCTTGATGGAAGAAGTATAGTGGTCCCCGGATATGAATCTGGCAATTTTATTGGCCCAACCATCTTAGCAGATGTTAGTTCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCAGTTCTTCTTCTCATGGAGGCTGATAGCTTGGAAGAGGCCATAAACATTGTCAACGGAAACAAGTATGGAAATGGTGCTACTATATTCACTAGATCTGGTGTCGCTGCAAGGAAATTTCAGACCGAAATTGAGGCAGGGCAGGTGGGCATCAATGTTCCTATTCCCGTTCCTTTGCCGTTTTTCTCCTTTACTGGCAACAAGGCATCATTTGCAGGCGATCTTAATTTCTACGGCAAGGCAGGGGTTAACTTTTATACACAAATCAAAACAGTAACTCAGAATTGGAAGGATTCAGATAGTGAGGACAAGATTAACATGGCAATGCCAACCTCTCAAAAATCTTAA 1533 0.4325 MATSHFSTQPYPLRVPNLIGGKFVESKSLTFIDVINPATQEVVSQVPLTTNEEFKAAVAAAKKAYPSWRNTPITKRQRVMLKFQELIRRDMDKLALNVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVSNGIDTFSIREPLGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLNIVHGAHDTVDAICDHDDIKAISFVGSNVAGMHIYARATAKGKRVQSNMGAKNHAVVMPDASVDATINALIAAGFGAAGQRCMALSTVVFVGGSKPWESILVERAKALKVNAGTEPDTDLGPVISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVSSDMECYKEEIFGPVLLLMEADSLEEAINIVNGNKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTVTQNWKDSDSEDKINMAMPTSQKS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04268 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 19 468 IPR016162 GO:0016491
Tsu08g04268 510 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 1 510 - -
Tsu08g04268 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Tsu08g04268 510 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 17 491 IPR010061 GO:0004491
Tsu08g04268 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 460 IPR016163 GO:0016620
Tsu08g04268 510 Pfam Aldehyde dehydrogenase family 23 487 IPR015590 GO:0016491
Tsu08g04268 510 CDD ALDH_F6_MMSDH 15 491 IPR010061 GO:0004491
Tsu08g04268 510 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 1 510 IPR010061 GO:0004491
Tsu08g04268 510 SUPERFAMILY ALDH-like 7 493 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04268 Tsu-Chr8 60663171 60668716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04268 7 475 Aldehyde Dehydrogenase Gene Family AT2G14170 82.553 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04268 K00140 - gmx:100783569 898.271