Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04264 ATGGGAAGAGGAAAGATTGCAATTAGAAGGATTGACAATTCAACAAGTAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGATTGTTGAAGAAAGCAAAAGAGTTATCAATTCTTTGTGATGCTGAAGTTGGATTGATTGTCTTTTCAAGCACCGGAAAGCTTTATGATTATTCAAGCACTAGCATGAAATCTGTTATTGATCGCTATAACAAACAGAAAGAGGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCAAGCCTGAGACAACAACTGCAGTACTTGCAAGAAAGCCATAgCAGGCAATTGATGGGTGAAGGACTTGCTGGTTTGGGTATTAAAGAACTACAAAATCTGGAAAACCAGCTGGAGATTAGTCTAAAGGGTGTTCGAATGAAAAAGGATCATATTTTGACTAATGAGATTAAAGAACTACACCAAAAGGGAAATCTTGTTCATCAAGAAAATGTAGAACTACATAAGAAGATGGACCTTGTCCAAAAAGAAAATGCAGTATTACTGAAGAAgGTTTATGAAGCAAGGAGTACAAATGAAGACAATGCAACAACCAATCTTTCATGCACTATCAGAAACGGATTTGATTTACATGCACCTATCAGTCTCCAGCTAAGTCAGCCACAGTCTCAATACAGTGAACCAGCAGACAAAGCCATGAAATTAGGGTATTCCCTTAAACTGATGATGTACAACATATAG 741 0.3725 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGKLYDYSSTSMKSVIDRYNKQKEEQHQLMNPASEVKFWQTEAASLRQQLQYLQESHSRQLMGEGLAGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGNLVHQENVELHKKMDLVQKENAVLLKKVYEARSTNEDNATTNLSCTIRNGFDLHAPISLQLSQPQSQYSEPADKAMKLGYSLKLMMYNI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04264 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g04264 246 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Tsu08g04264 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 245 - -
Tsu08g04264 246 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tsu08g04264 246 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 245 - -
Tsu08g04264 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g04264 246 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Tsu08g04264 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 Coils Coil 86 106 - -
Tsu08g04264 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu08g04264 246 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04264 Tsu-Chr8 60615693 60630055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04264 1 241 MADS-box Gene Family AT2G14210 61.570 5.35e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu08g04264 K-box 7.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04264 K09264 - gmx:100808145 382.874